miRNA display CGI


Results 41 - 60 of 121 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5116 5' -55.6 NC_001798.1 + 15378 0.67 0.872795
Target:  5'- cCGugGGCGcGGCgGAGgcgCCCAcCGGACc -3'
miRNA:   3'- -GUugCCGC-CCG-CUCaa-GGGUcGUUUG- -5'
5116 5' -55.6 NC_001798.1 + 1834 0.67 0.865334
Target:  5'- --uCGGCGGGCcAG-UCCgCGGCGcGCa -3'
miRNA:   3'- guuGCCGCCCGcUCaAGG-GUCGUuUG- -5'
5116 5' -55.6 NC_001798.1 + 20348 0.67 0.865334
Target:  5'- aGGCGGUuggcgcugccGGGCGGGUUCggggCGGCAcGCa -3'
miRNA:   3'- gUUGCCG----------CCCGCUCAAGg---GUCGUuUG- -5'
5116 5' -55.6 NC_001798.1 + 153083 0.67 0.865334
Target:  5'- gAGCGGCgGGGCGGcgccGggCCCucGCGGAUa -3'
miRNA:   3'- gUUGCCG-CCCGCU----CaaGGGu-CGUUUG- -5'
5116 5' -55.6 NC_001798.1 + 1776 0.67 0.865334
Target:  5'- -cACGGCGGGC-AGcaCCUcGCAGGCc -3'
miRNA:   3'- guUGCCGCCCGcUCaaGGGuCGUUUG- -5'
5116 5' -55.6 NC_001798.1 + 31360 0.67 0.865334
Target:  5'- -cGCGGCGGGUGGGcgaagacgCCgCGGCGGc- -3'
miRNA:   3'- guUGCCGCCCGCUCaa------GG-GUCGUUug -5'
5116 5' -55.6 NC_001798.1 + 85673 0.67 0.865334
Target:  5'- cCGACGGCGGGgugccCGGGcgccacgCCCAG-AAGCa -3'
miRNA:   3'- -GUUGCCGCCC-----GCUCaa-----GGGUCgUUUG- -5'
5116 5' -55.6 NC_001798.1 + 96983 0.67 0.865334
Target:  5'- -cGCGGCGGGCGgcGGggCCagGGCcGGCc -3'
miRNA:   3'- guUGCCGCCCGC--UCaaGGg-UCGuUUG- -5'
5116 5' -55.6 NC_001798.1 + 127229 0.67 0.865334
Target:  5'- aCAACGaGCGGGcCGAGUUuaacaaccgccCCCugaAGCAcGACg -3'
miRNA:   3'- -GUUGC-CGCCC-GCUCAA-----------GGG---UCGU-UUG- -5'
5116 5' -55.6 NC_001798.1 + 95375 0.67 0.857659
Target:  5'- -uGCGGaGGGCGGGgcggcggUCgCCAGCAGc- -3'
miRNA:   3'- guUGCCgCCCGCUCa------AG-GGUCGUUug -5'
5116 5' -55.6 NC_001798.1 + 2690 0.67 0.857659
Target:  5'- -cGCGGCGaGCGAGUcggCCgCGGCGAc- -3'
miRNA:   3'- guUGCCGCcCGCUCAa--GG-GUCGUUug -5'
5116 5' -55.6 NC_001798.1 + 44687 0.67 0.857659
Target:  5'- aCAACGGCucGGCc----CCCAGCAGGCa -3'
miRNA:   3'- -GUUGCCGc-CCGcucaaGGGUCGUUUG- -5'
5116 5' -55.6 NC_001798.1 + 9696 0.67 0.857659
Target:  5'- -cACGuGCGGGCGGGUgggCUCGaCGGGCu -3'
miRNA:   3'- guUGC-CGCCCGCUCAa--GGGUcGUUUG- -5'
5116 5' -55.6 NC_001798.1 + 40139 0.67 0.849777
Target:  5'- gGAUGGCGGGUGuccUCCgAGgGGGCg -3'
miRNA:   3'- gUUGCCGCCCGCucaAGGgUCgUUUG- -5'
5116 5' -55.6 NC_001798.1 + 70291 0.67 0.849777
Target:  5'- aCGGCGGCguuucuguugucGGGCGcggcGGUcggCCCGGCGGAg -3'
miRNA:   3'- -GUUGCCG------------CCCGC----UCAa--GGGUCGUUUg -5'
5116 5' -55.6 NC_001798.1 + 154151 0.68 0.841695
Target:  5'- -cAUGGCGGGCGGcuGggCUCGGCGuaGGCc -3'
miRNA:   3'- guUGCCGCCCGCU--CaaGGGUCGU--UUG- -5'
5116 5' -55.6 NC_001798.1 + 75135 0.68 0.841695
Target:  5'- gGGCGGCGGcGaCGAcGggCCC-GCGAGCc -3'
miRNA:   3'- gUUGCCGCC-C-GCU-CaaGGGuCGUUUG- -5'
5116 5' -55.6 NC_001798.1 + 23711 0.68 0.841695
Target:  5'- -cACGGcCGGGCGGc--CCCGGCGGGu -3'
miRNA:   3'- guUGCC-GCCCGCUcaaGGGUCGUUUg -5'
5116 5' -55.6 NC_001798.1 + 6018 0.68 0.841695
Target:  5'- gCAGCGGCGGcaucGCGAaggGggCCaCAGCGAGa -3'
miRNA:   3'- -GUUGCCGCC----CGCU---CaaGG-GUCGUUUg -5'
5116 5' -55.6 NC_001798.1 + 149181 0.68 0.833419
Target:  5'- cCggUGGgGGGCGGcUUCCuucgggCAGCAAGCc -3'
miRNA:   3'- -GuuGCCgCCCGCUcAAGG------GUCGUUUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.