miRNA display CGI


Results 41 - 60 of 121 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5116 5' -55.6 NC_001798.1 + 43526 0.66 0.922599
Target:  5'- gCGGCGGCcgcgucucccgccaGGGCGGuUUCCCuggGGguGACg -3'
miRNA:   3'- -GUUGCCG--------------CCCGCUcAAGGG---UCguUUG- -5'
5116 5' -55.6 NC_001798.1 + 1409 0.66 0.924253
Target:  5'- gCAGCGGCGcGCccAGgcCCCAGCGcGCg -3'
miRNA:   3'- -GUUGCCGCcCGc-UCaaGGGUCGUuUG- -5'
5116 5' -55.6 NC_001798.1 + 2539 0.66 0.924253
Target:  5'- gGGCGGgGGGCGcGgcCCCcGCGGGa -3'
miRNA:   3'- gUUGCCgCCCGCuCaaGGGuCGUUUg -5'
5116 5' -55.6 NC_001798.1 + 97842 0.66 0.924253
Target:  5'- uGACGGCGGGCGcGggCaCGGuCAucGACa -3'
miRNA:   3'- gUUGCCGCCCGCuCaaGgGUC-GU--UUG- -5'
5116 5' -55.6 NC_001798.1 + 31048 0.66 0.924253
Target:  5'- gGGCGGggguCGGGCGGGggUCgGGCAcuAACc -3'
miRNA:   3'- gUUGCC----GCCCGCUCaaGGgUCGU--UUG- -5'
5116 5' -55.6 NC_001798.1 + 30982 0.66 0.91281
Target:  5'- gGGCGGggguCGGGCGGGggUCgGGCGGGg -3'
miRNA:   3'- gUUGCC----GCCCGCUCaaGGgUCGUUUg -5'
5116 5' -55.6 NC_001798.1 + 93156 0.66 0.91281
Target:  5'- uGAUGGCGGGCGAcgccgCCCuGGCc--- -3'
miRNA:   3'- gUUGCCGCCCGCUcaa--GGG-UCGuuug -5'
5116 5' -55.6 NC_001798.1 + 30146 0.66 0.893847
Target:  5'- aAGCaGCGGGCGGGgggCCgGGguGAg -3'
miRNA:   3'- gUUGcCGCCCGCUCaa-GGgUCguUUg -5'
5116 5' -55.6 NC_001798.1 + 42489 0.66 0.893847
Target:  5'- aCAACGuacgGGGCGGGga-CCGGUAGGCa -3'
miRNA:   3'- -GUUGCcg--CCCGCUCaagGGUCGUUUG- -5'
5116 5' -55.6 NC_001798.1 + 153802 0.66 0.893847
Target:  5'- gCGGCGGCGGGgGgcAGgcggCGGCAGGCg -3'
miRNA:   3'- -GUUGCCGCCCgC--UCaaggGUCGUUUG- -5'
5116 5' -55.6 NC_001798.1 + 56565 0.66 0.89781
Target:  5'- gCGACGGCcaccuucuccgccGGCGAGgagucgUCCCccaggaaccaGGCAAACg -3'
miRNA:   3'- -GUUGCCGc------------CCGCUCa-----AGGG----------UCGUUUG- -5'
5116 5' -55.6 NC_001798.1 + 16489 0.66 0.900405
Target:  5'- uGACGGCaGGcGCGGGUgagCCGGUAGuACg -3'
miRNA:   3'- gUUGCCG-CC-CGCUCAag-GGUCGUU-UG- -5'
5116 5' -55.6 NC_001798.1 + 95688 0.66 0.900405
Target:  5'- gCGGCGGCggGGGCGGccggcGUcgCCCgaaAGCGGGCg -3'
miRNA:   3'- -GUUGCCG--CCCGCU-----CAa-GGG---UCGUUUG- -5'
5116 5' -55.6 NC_001798.1 + 141490 0.66 0.900405
Target:  5'- -cGCGGgGGGCuGAuGUccguggCCCuGCAGACg -3'
miRNA:   3'- guUGCCgCCCG-CU-CAa-----GGGuCGUUUG- -5'
5116 5' -55.6 NC_001798.1 + 2282 0.66 0.900405
Target:  5'- gCAGCGcGCGGccaGCGAGg--CCAGCGcGCg -3'
miRNA:   3'- -GUUGC-CGCC---CGCUCaagGGUCGUuUG- -5'
5116 5' -55.6 NC_001798.1 + 132604 0.66 0.904855
Target:  5'- gAGCGccaGCGGGC-AGUggccggcacaguuuUCCCAGguGACg -3'
miRNA:   3'- gUUGC---CGCCCGcUCA--------------AGGGUCguUUG- -5'
5116 5' -55.6 NC_001798.1 + 71403 0.66 0.906727
Target:  5'- uUggUGGCGGGgGug--CCCGcGCGGACg -3'
miRNA:   3'- -GuuGCCGCCCgCucaaGGGU-CGUUUG- -5'
5116 5' -55.6 NC_001798.1 + 150424 0.66 0.906727
Target:  5'- gCGGCGGCGGcGCGGGgcggacUCCGGaCGcGCg -3'
miRNA:   3'- -GUUGCCGCC-CGCUCaa----GGGUC-GUuUG- -5'
5116 5' -55.6 NC_001798.1 + 91576 0.66 0.906727
Target:  5'- -cGCGG-GGGCGccgcGGUUucuuuuuaucggCCCGGCAGGCc -3'
miRNA:   3'- guUGCCgCCCGC----UCAA------------GGGUCGUUUG- -5'
5116 5' -55.6 NC_001798.1 + 86631 0.66 0.91281
Target:  5'- -uGCGGCaacgaguucgagGGGCGGGUcuguauagCCCuGCGGGCc -3'
miRNA:   3'- guUGCCG------------CCCGCUCAa-------GGGuCGUUUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.