Results 61 - 80 of 121 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
5116 | 5' | -55.6 | NC_001798.1 | + | 102232 | 0.68 | 0.833419 |
Target: 5'- -cGCGGCucgGGGCGGGccucgCCCGGguAAUa -3' miRNA: 3'- guUGCCG---CCCGCUCaa---GGGUCguUUG- -5' |
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5116 | 5' | -55.6 | NC_001798.1 | + | 43125 | 0.68 | 0.824957 |
Target: 5'- --cCGGCGGGCGcGcgUCCCGcgucacGCGGGCc -3' miRNA: 3'- guuGCCGCCCGCuCa-AGGGU------CGUUUG- -5' |
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5116 | 5' | -55.6 | NC_001798.1 | + | 154124 | 0.68 | 0.816318 |
Target: 5'- cCGGCGGCGGG-GAc--CCCGGCGgcggGACa -3' miRNA: 3'- -GUUGCCGCCCgCUcaaGGGUCGU----UUG- -5' |
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5116 | 5' | -55.6 | NC_001798.1 | + | 19283 | 0.68 | 0.816318 |
Target: 5'- -uACGGCGuGGUG-GUgCCCGGCGAc- -3' miRNA: 3'- guUGCCGC-CCGCuCAaGGGUCGUUug -5' |
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5116 | 5' | -55.6 | NC_001798.1 | + | 56245 | 0.68 | 0.807508 |
Target: 5'- cCGGCGGcCGGGCccggccccgGAGUUaCCgCAGCcGACg -3' miRNA: 3'- -GUUGCC-GCCCG---------CUCAA-GG-GUCGuUUG- -5' |
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5116 | 5' | -55.6 | NC_001798.1 | + | 150928 | 0.68 | 0.807508 |
Target: 5'- gGGgGGCGGGCGGGacguagUCCaCuGCAGAg -3' miRNA: 3'- gUUgCCGCCCGCUCa-----AGG-GuCGUUUg -5' |
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5116 | 5' | -55.6 | NC_001798.1 | + | 122090 | 0.69 | 0.798537 |
Target: 5'- --cUGGCGGGCcugGAGccgCCCGGCGGGg -3' miRNA: 3'- guuGCCGCCCG---CUCaa-GGGUCGUUUg -5' |
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5116 | 5' | -55.6 | NC_001798.1 | + | 127934 | 0.69 | 0.798537 |
Target: 5'- cCGACGGCGGGgcccCGGGcgaaaaggCCCGGCccGCg -3' miRNA: 3'- -GUUGCCGCCC----GCUCaa------GGGUCGuuUG- -5' |
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5116 | 5' | -55.6 | NC_001798.1 | + | 128875 | 0.69 | 0.798537 |
Target: 5'- uGAUGGCGcGGCGAucgccggaggcGUUCCgGGCGuuCa -3' miRNA: 3'- gUUGCCGC-CCGCU-----------CAAGGgUCGUuuG- -5' |
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5116 | 5' | -55.6 | NC_001798.1 | + | 91125 | 0.69 | 0.798537 |
Target: 5'- -cGCGG-GGGCGuccucgUCCAGCGAACg -3' miRNA: 3'- guUGCCgCCCGCucaa--GGGUCGUUUG- -5' |
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5116 | 5' | -55.6 | NC_001798.1 | + | 136668 | 0.69 | 0.798537 |
Target: 5'- gGACGGgGGGCGGauuGUUggCCAGCAggUa -3' miRNA: 3'- gUUGCCgCCCGCU---CAAg-GGUCGUuuG- -5' |
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5116 | 5' | -55.6 | NC_001798.1 | + | 91480 | 0.69 | 0.797632 |
Target: 5'- gGAUGGCGGuGcCGAuGUUCCCcccggcucuuaccGGCGGACc -3' miRNA: 3'- gUUGCCGCC-C-GCU-CAAGGG-------------UCGUUUG- -5' |
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5116 | 5' | -55.6 | NC_001798.1 | + | 102563 | 0.69 | 0.794906 |
Target: 5'- uCAGCGGCGGGUGGcGgggcgcggauugCCCGGUgacGAGCu -3' miRNA: 3'- -GUUGCCGCCCGCU-Caa----------GGGUCG---UUUG- -5' |
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5116 | 5' | -55.6 | NC_001798.1 | + | 137306 | 0.69 | 0.789414 |
Target: 5'- gGAUGGC-GGCGGccGUUCCCucaucGGCGGGCg -3' miRNA: 3'- gUUGCCGcCCGCU--CAAGGG-----UCGUUUG- -5' |
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5116 | 5' | -55.6 | NC_001798.1 | + | 2248 | 0.69 | 0.789414 |
Target: 5'- aGGCGGCGGGCGcGccgCCGGgGGGCg -3' miRNA: 3'- gUUGCCGCCCGCuCaagGGUCgUUUG- -5' |
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5116 | 5' | -55.6 | NC_001798.1 | + | 142855 | 0.69 | 0.789414 |
Target: 5'- gGACGGCGGGgGugcuuagucuGGUUCCguagaCAGCAuGACg -3' miRNA: 3'- gUUGCCGCCCgC----------UCAAGG-----GUCGU-UUG- -5' |
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5116 | 5' | -55.6 | NC_001798.1 | + | 52617 | 0.69 | 0.789414 |
Target: 5'- uGACGGCGGGuCGAcGgcCCCcgaGGUggGCa -3' miRNA: 3'- gUUGCCGCCC-GCU-CaaGGG---UCGuuUG- -5' |
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5116 | 5' | -55.6 | NC_001798.1 | + | 18225 | 0.69 | 0.789414 |
Target: 5'- gGACGGUGGGCGggaaggguggauGGUUUCCGGgGGc- -3' miRNA: 3'- gUUGCCGCCCGC------------UCAAGGGUCgUUug -5' |
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5116 | 5' | -55.6 | NC_001798.1 | + | 57742 | 0.69 | 0.780146 |
Target: 5'- --cCGGUGGGCGcg--CCCGGCGcAGCg -3' miRNA: 3'- guuGCCGCCCGCucaaGGGUCGU-UUG- -5' |
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5116 | 5' | -55.6 | NC_001798.1 | + | 31154 | 0.69 | 0.780146 |
Target: 5'- gGGCGGCGGuGCGGGggcgaCCC-GCGGAa -3' miRNA: 3'- gUUGCCGCC-CGCUCaa---GGGuCGUUUg -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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