miRNA display CGI


Results 61 - 80 of 175 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5117 5' -62 NC_001798.1 + 31139 0.68 0.555161
Target:  5'- aGCGCcccgGCgCGGGgGCGGCgguGCGGG-GGc -3'
miRNA:   3'- gCGCGa---CG-GCCUgCGCCG---UGUCCaCC- -5'
5117 5' -62 NC_001798.1 + 31349 0.7 0.445339
Target:  5'- gCGCGC-GCa-GGCGCGGC--GGGUGGg -3'
miRNA:   3'- -GCGCGaCGgcCUGCGCCGugUCCACC- -5'
5117 5' -62 NC_001798.1 + 31652 0.67 0.613119
Target:  5'- uGCGa-GCgCGGACGCGGC-CGGGc-- -3'
miRNA:   3'- gCGCgaCG-GCCUGCGCCGuGUCCacc -5'
5117 5' -62 NC_001798.1 + 31783 0.71 0.368364
Target:  5'- aCGCGCgcgggucgggaggGCCGGGCGCGGa--GGGaGGa -3'
miRNA:   3'- -GCGCGa------------CGGCCUGCGCCgugUCCaCC- -5'
5117 5' -62 NC_001798.1 + 32793 0.67 0.62286
Target:  5'- cCGCGCcgGCCGGcgacgccccCGCGGgcCACGGGgaguagGGg -3'
miRNA:   3'- -GCGCGa-CGGCCu--------GCGCC--GUGUCCa-----CC- -5'
5117 5' -62 NC_001798.1 + 34610 0.66 0.690835
Target:  5'- aCGCGg-GCaaaGGGCgGCGGCGgCGGGgggGGg -3'
miRNA:   3'- -GCGCgaCGg--CCUG-CGCCGU-GUCCa--CC- -5'
5117 5' -62 NC_001798.1 + 34791 0.69 0.517404
Target:  5'- -aCGCcGCCGG-CGCGGCcCGGGgccccgGGg -3'
miRNA:   3'- gcGCGaCGGCCuGCGCCGuGUCCa-----CC- -5'
5117 5' -62 NC_001798.1 + 34824 0.66 0.655986
Target:  5'- cCGCGCUccgccgggggcccggGCCGGAcCGCcGgGCGGG-GGa -3'
miRNA:   3'- -GCGCGA---------------CGGCCU-GCGcCgUGUCCaCC- -5'
5117 5' -62 NC_001798.1 + 34955 0.69 0.508121
Target:  5'- aCGCGCggcGCCGGAgGgGGCggccgccgagguGCGGG-GGc -3'
miRNA:   3'- -GCGCGa--CGGCCUgCgCCG------------UGUCCaCC- -5'
5117 5' -62 NC_001798.1 + 35584 0.74 0.274155
Target:  5'- gGCGCUGCuCGGcUGCGGCcGCGGGcuccgGGg -3'
miRNA:   3'- gCGCGACG-GCCuGCGCCG-UGUCCa----CC- -5'
5117 5' -62 NC_001798.1 + 36022 0.66 0.671523
Target:  5'- cCGCGCcuugGCUguuuggggGGugGCGGCGguGGUc- -3'
miRNA:   3'- -GCGCGa---CGG--------CCugCGCCGUguCCAcc -5'
5117 5' -62 NC_001798.1 + 36060 0.82 0.073747
Target:  5'- gCGUGCUGCCGGaggcugcggGCGCGGggUAGGUGGg -3'
miRNA:   3'- -GCGCGACGGCC---------UGCGCCguGUCCACC- -5'
5117 5' -62 NC_001798.1 + 36133 0.69 0.480715
Target:  5'- cCGCGaucccGCCGGugG-GGCGCggcggcggucgGGGUGGg -3'
miRNA:   3'- -GCGCga---CGGCCugCgCCGUG-----------UCCACC- -5'
5117 5' -62 NC_001798.1 + 36400 0.75 0.239149
Target:  5'- gGCGCcggggccccccUGCCGGGCGgGGCGguGGggcgGGg -3'
miRNA:   3'- gCGCG-----------ACGGCCUGCgCCGUguCCa---CC- -5'
5117 5' -62 NC_001798.1 + 36523 0.74 0.268048
Target:  5'- gCGCGCggcgGCCGGgcgggggcGCGCGGCGgcCGGGcGGg -3'
miRNA:   3'- -GCGCGa---CGGCC--------UGCGCCGU--GUCCaCC- -5'
5117 5' -62 NC_001798.1 + 36565 0.74 0.268048
Target:  5'- gCGCGCggcgGCCGGgcgggggcGCGCGGCGgcCGGGcGGg -3'
miRNA:   3'- -GCGCGa---CGGCC--------UGCGCCGU--GUCCaCC- -5'
5117 5' -62 NC_001798.1 + 36607 0.74 0.268048
Target:  5'- gCGCGCggcgGCCGGgcgggggcGCGCGGCGgcCGGGcGGg -3'
miRNA:   3'- -GCGCGa---CGGCC--------UGCGCCGU--GUCCaCC- -5'
5117 5' -62 NC_001798.1 + 37009 0.67 0.603391
Target:  5'- aGUGUgGCCGG-CGCGaGCGCGGGc-- -3'
miRNA:   3'- gCGCGaCGGCCuGCGC-CGUGUCCacc -5'
5117 5' -62 NC_001798.1 + 37200 0.7 0.436724
Target:  5'- cCGCGCcGaacgaCGGGCGCGGCGCcGGagcuuUGGc -3'
miRNA:   3'- -GCGCGaCg----GCCUGCGCCGUGuCC-----ACC- -5'
5117 5' -62 NC_001798.1 + 38415 0.67 0.602419
Target:  5'- aCGCGCUaugaagcggGCCGGGcCGgGGCcccACAuuuauccGGUGGg -3'
miRNA:   3'- -GCGCGA---------CGGCCU-GCgCCG---UGU-------CCACC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.