miRNA display CGI


Results 41 - 60 of 175 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5117 5' -62 NC_001798.1 + 25573 0.68 0.526754
Target:  5'- uCGcCGCUGCCGGGCGaggaccuGGCcGCGGGccgcgccgGGg -3'
miRNA:   3'- -GC-GCGACGGCCUGCg------CCG-UGUCCa-------CC- -5'
5117 5' -62 NC_001798.1 + 25957 0.68 0.574347
Target:  5'- cCGUGC-GCUGGcCgGCGGCGCGGGa-- -3'
miRNA:   3'- -GCGCGaCGGCCuG-CGCCGUGUCCacc -5'
5117 5' -62 NC_001798.1 + 26189 0.66 0.660847
Target:  5'- gGCGCUggacgGCCGGGcCGCcgccucgGGCGCGGGcgacgccaUGGc -3'
miRNA:   3'- gCGCGA-----CGGCCU-GCG-------CCGUGUCC--------ACC- -5'
5117 5' -62 NC_001798.1 + 26438 0.69 0.49891
Target:  5'- gGUGCUGCgCGacGACGCGGaCGCGGGc-- -3'
miRNA:   3'- gCGCGACG-GC--CUGCGCC-GUGUCCacc -5'
5117 5' -62 NC_001798.1 + 26501 0.71 0.36377
Target:  5'- cCGCGCggggacggUGCUGGcCGCGGCgggcgGCGGcGUGGa -3'
miRNA:   3'- -GCGCG--------ACGGCCuGCGCCG-----UGUC-CACC- -5'
5117 5' -62 NC_001798.1 + 26817 0.68 0.574347
Target:  5'- gCGgGCggggGUCGGGCG-GGCGgGGGUcGGg -3'
miRNA:   3'- -GCgCGa---CGGCCUGCgCCGUgUCCA-CC- -5'
5117 5' -62 NC_001798.1 + 26847 0.68 0.574347
Target:  5'- gCGgGCggggGUCGGGCG-GGCGgGGGUcGGg -3'
miRNA:   3'- -GCgCGa---CGGCCUGCgCCGUgUCCA-CC- -5'
5117 5' -62 NC_001798.1 + 26877 0.68 0.574347
Target:  5'- gCGgGCggggGUCGGGCG-GGCGgGGGUcGGg -3'
miRNA:   3'- -GCgCGa---CGGCCUGCgCCGUgUCCA-CC- -5'
5117 5' -62 NC_001798.1 + 26907 0.68 0.574347
Target:  5'- gCGgGCggggGUCGGGCG-GGCGgGGGUcGGg -3'
miRNA:   3'- -GCgCGa---CGGCCUGCgCCGUgUCCA-CC- -5'
5117 5' -62 NC_001798.1 + 26940 0.69 0.49891
Target:  5'- gGCGggGUCGGGCG-GGCGgGGGUcGGg -3'
miRNA:   3'- gCGCgaCGGCCUGCgCCGUgUCCA-CC- -5'
5117 5' -62 NC_001798.1 + 26966 0.68 0.574347
Target:  5'- gCGgGCggggGUCGGGCG-GGCGgGGGUcGGg -3'
miRNA:   3'- -GCgCGa---CGGCCUGCgCCGUgUCCA-CC- -5'
5117 5' -62 NC_001798.1 + 26996 0.68 0.574347
Target:  5'- gCGgGCggggGUCGGGCG-GGCGgGGGUcGGg -3'
miRNA:   3'- -GCgCGa---CGGCCUGCgCCGUgUCCA-CC- -5'
5117 5' -62 NC_001798.1 + 27165 0.66 0.642354
Target:  5'- gGgGCUGCUgcgagcucgGGGcCGCgGGCGCGGG-GGg -3'
miRNA:   3'- gCgCGACGG---------CCU-GCG-CCGUGUCCaCC- -5'
5117 5' -62 NC_001798.1 + 27484 0.7 0.436724
Target:  5'- cCGCGCgggGgCGGGCGCGggaaaaaagccGCGCGGG-GGc -3'
miRNA:   3'- -GCGCGa--CgGCCUGCGC-----------CGUGUCCaCC- -5'
5117 5' -62 NC_001798.1 + 27521 0.66 0.671523
Target:  5'- nGCGCccGCgGGAaggcagcccCGCGGCGCGcGGgGGg -3'
miRNA:   3'- gCGCGa-CGgCCU---------GCGCCGUGU-CCaCC- -5'
5117 5' -62 NC_001798.1 + 30758 0.68 0.536167
Target:  5'- cCGCGUggagGCCGaGGCGgccgugcgggcCGGCACGGccGUGGa -3'
miRNA:   3'- -GCGCGa---CGGC-CUGC-----------GCCGUGUC--CACC- -5'
5117 5' -62 NC_001798.1 + 30936 0.68 0.536167
Target:  5'- gGCgGCggggGUCGGGCGgGGgGCGGGcGGg -3'
miRNA:   3'- gCG-CGa---CGGCCUGCgCCgUGUCCaCC- -5'
5117 5' -62 NC_001798.1 + 30969 0.68 0.555161
Target:  5'- uCGgGCggggGUCGGGCGgGGguCGGGcGGg -3'
miRNA:   3'- -GCgCGa---CGGCCUGCgCCguGUCCaCC- -5'
5117 5' -62 NC_001798.1 + 31002 0.68 0.555161
Target:  5'- uCGgGCggggGUCGGGCGgGGguCGGGcGGg -3'
miRNA:   3'- -GCgCGa---CGGCCUGCgCCguGUCCaCC- -5'
5117 5' -62 NC_001798.1 + 31035 0.68 0.555161
Target:  5'- uCGgGCggggGUCGGGCGgGGguCGGGcGGg -3'
miRNA:   3'- -GCgCGa---CGGCCUGCgCCguGUCCaCC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.