miRNA display CGI


Results 41 - 60 of 175 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5117 5' -62 NC_001798.1 + 113634 0.67 0.593682
Target:  5'- uGCGCgGCCGG-CGCcGCcAUguGGGUGGc -3'
miRNA:   3'- gCGCGaCGGCCuGCGcCG-UG--UCCACC- -5'
5117 5' -62 NC_001798.1 + 113307 0.67 0.592712
Target:  5'- cCGCuGgaGCUGGugGCcgcgGGCauguauuACGGGUGGa -3'
miRNA:   3'- -GCG-CgaCGGCCugCG----CCG-------UGUCCACC- -5'
5117 5' -62 NC_001798.1 + 111807 0.7 0.457558
Target:  5'- cCGUGC-GCCGGuCGCgggcguccaggggcuGGCGCGGGgcgGGa -3'
miRNA:   3'- -GCGCGaCGGCCuGCG---------------CCGUGUCCa--CC- -5'
5117 5' -62 NC_001798.1 + 102741 0.66 0.661819
Target:  5'- aCGCGCa--CGGACggcgaccuGCGGCGCGGGa-- -3'
miRNA:   3'- -GCGCGacgGCCUG--------CGCCGUGUCCacc -5'
5117 5' -62 NC_001798.1 + 102539 0.7 0.428205
Target:  5'- -cCGCgGCCGGcaggccgcACGCGGUcagcgGCGGGUGGc -3'
miRNA:   3'- gcGCGaCGGCC--------UGCGCCG-----UGUCCACC- -5'
5117 5' -62 NC_001798.1 + 102211 0.72 0.348745
Target:  5'- gCGCGCcgggagucGaCCGGGCGCGGCuCGGGgcgGGc -3'
miRNA:   3'- -GCGCGa-------C-GGCCUGCGCCGuGUCCa--CC- -5'
5117 5' -62 NC_001798.1 + 99236 0.67 0.603391
Target:  5'- aCGCGCacgaGCCGGGgGUGGCACAc---- -3'
miRNA:   3'- -GCGCGa---CGGCCUgCGCCGUGUccacc -5'
5117 5' -62 NC_001798.1 + 98554 0.72 0.327048
Target:  5'- gCGCGCUGgUcGugGgGGCGCuGGUGGc -3'
miRNA:   3'- -GCGCGACgGcCugCgCCGUGuCCACC- -5'
5117 5' -62 NC_001798.1 + 97453 0.72 0.327048
Target:  5'- uGCGCcgcgUGCUGG-CGCGGCugGGGgccGGc -3'
miRNA:   3'- gCGCG----ACGGCCuGCGCCGugUCCa--CC- -5'
5117 5' -62 NC_001798.1 + 96968 0.7 0.419785
Target:  5'- gGCGCUgGCgCGGAcCGCGGCgggcgGCGGGgccaGGg -3'
miRNA:   3'- gCGCGA-CG-GCCU-GCGCCG-----UGUCCa---CC- -5'
5117 5' -62 NC_001798.1 + 96680 0.66 0.675397
Target:  5'- cCGCGCUggaGCgcguccgggaguuuaUGGugGCGGCGguGG-GGu -3'
miRNA:   3'- -GCGCGA---CG---------------GCCugCGCCGUguCCaCC- -5'
5117 5' -62 NC_001798.1 + 96344 0.67 0.632607
Target:  5'- gCGUGCUGCgGcGGCaccuGCGGC-CGGGgcUGGa -3'
miRNA:   3'- -GCGCGACGgC-CUG----CGCCGuGUCC--ACC- -5'
5117 5' -62 NC_001798.1 + 94991 0.67 0.632607
Target:  5'- gGCgGCcGCCuGGGCcccgcaggGCGGCGCGGGccUGGa -3'
miRNA:   3'- gCG-CGaCGG-CCUG--------CGCCGUGUCC--ACC- -5'
5117 5' -62 NC_001798.1 + 91615 0.67 0.62286
Target:  5'- cCGCGCUuaUGGGCGgcCGGCcgccCGGGUGa -3'
miRNA:   3'- -GCGCGAcgGCCUGC--GCCGu---GUCCACc -5'
5117 5' -62 NC_001798.1 + 91083 0.71 0.379238
Target:  5'- gGCGC-GCCGGAgGCGGC-CGucGUGGa -3'
miRNA:   3'- gCGCGaCGGCCUgCGCCGuGUc-CACC- -5'
5117 5' -62 NC_001798.1 + 90413 0.67 0.602419
Target:  5'- gGCGCguucccgcgGCCGGGCuugagGCGGUACcagccgaAGGUGa -3'
miRNA:   3'- gCGCGa--------CGGCCUG-----CGCCGUG-------UCCACc -5'
5117 5' -62 NC_001798.1 + 89676 0.68 0.574347
Target:  5'- cCGCGCUGCgCGGGCccggaGGCGuagUAGGcGGg -3'
miRNA:   3'- -GCGCGACG-GCCUGcg---CCGU---GUCCaCC- -5'
5117 5' -62 NC_001798.1 + 88235 0.67 0.613119
Target:  5'- gGCGCuUGuuGGuguACGC-GCGCGGGUGu -3'
miRNA:   3'- gCGCG-ACggCC---UGCGcCGUGUCCACc -5'
5117 5' -62 NC_001798.1 + 86934 0.66 0.690835
Target:  5'- aGC-CUGCCGucgcACGC-GCGCAGGcUGGa -3'
miRNA:   3'- gCGcGACGGCc---UGCGcCGUGUCC-ACC- -5'
5117 5' -62 NC_001798.1 + 86251 0.66 0.661819
Target:  5'- cCGUGCUgaagcacgGCCGGggGCGCGGgCGCAccGGcGGg -3'
miRNA:   3'- -GCGCGA--------CGGCC--UGCGCC-GUGU--CCaCC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.