miRNA display CGI


Results 41 - 60 of 175 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5117 5' -62 NC_001798.1 + 19742 0.7 0.411467
Target:  5'- cCGCGCUcaugGCCGGAgaaaugUGUGGCcGCAGGgauagGGg -3'
miRNA:   3'- -GCGCGA----CGGCCU------GCGCCG-UGUCCa----CC- -5'
5117 5' -62 NC_001798.1 + 9653 0.7 0.411467
Target:  5'- gGCGCagcggGCCGcGCGCggagGGCGCGGGaUGGg -3'
miRNA:   3'- gCGCGa----CGGCcUGCG----CCGUGUCC-ACC- -5'
5117 5' -62 NC_001798.1 + 52562 0.7 0.411467
Target:  5'- aGCgGCUGCUGGGCcUGGCcgACAcGGUGGu -3'
miRNA:   3'- gCG-CGACGGCCUGcGCCG--UGU-CCACC- -5'
5117 5' -62 NC_001798.1 + 43490 0.7 0.419785
Target:  5'- aGgGCcGCCGGggcauacguGCGCGcGCGCAGGUaGGc -3'
miRNA:   3'- gCgCGaCGGCC---------UGCGC-CGUGUCCA-CC- -5'
5117 5' -62 NC_001798.1 + 96968 0.7 0.419785
Target:  5'- gGCGCUgGCgCGGAcCGCGGCgggcgGCGGGgccaGGg -3'
miRNA:   3'- gCGCGA-CG-GCCU-GCGCCG-----UGUCCa---CC- -5'
5117 5' -62 NC_001798.1 + 22877 0.7 0.419785
Target:  5'- cCGCGCgGCCcGGGuucggGUGGCAC-GGUGGg -3'
miRNA:   3'- -GCGCGaCGG-CCUg----CGCCGUGuCCACC- -5'
5117 5' -62 NC_001798.1 + 102539 0.7 0.428205
Target:  5'- -cCGCgGCCGGcaggccgcACGCGGUcagcgGCGGGUGGc -3'
miRNA:   3'- gcGCGaCGGCC--------UGCGCCG-----UGUCCACC- -5'
5117 5' -62 NC_001798.1 + 17540 0.7 0.428205
Target:  5'- --aGCUGCCGGGagacCGCGGUuaucugUAGGUGGc -3'
miRNA:   3'- gcgCGACGGCCU----GCGCCGu-----GUCCACC- -5'
5117 5' -62 NC_001798.1 + 37200 0.7 0.436724
Target:  5'- cCGCGCcGaacgaCGGGCGCGGCGCcGGagcuuUGGc -3'
miRNA:   3'- -GCGCGaCg----GCCUGCGCCGUGuCC-----ACC- -5'
5117 5' -62 NC_001798.1 + 27484 0.7 0.436724
Target:  5'- cCGCGCgggGgCGGGCGCGggaaaaaagccGCGCGGG-GGc -3'
miRNA:   3'- -GCGCGa--CgGCCUGCGC-----------CGUGUCCaCC- -5'
5117 5' -62 NC_001798.1 + 31349 0.7 0.445339
Target:  5'- gCGCGC-GCa-GGCGCGGC--GGGUGGg -3'
miRNA:   3'- -GCGCGaCGgcCUGCGCCGugUCCACC- -5'
5117 5' -62 NC_001798.1 + 4412 0.7 0.445339
Target:  5'- gGgGC-GCCGGGgguCGCGGCgACAGGcUGGc -3'
miRNA:   3'- gCgCGaCGGCCU---GCGCCG-UGUCC-ACC- -5'
5117 5' -62 NC_001798.1 + 111807 0.7 0.457558
Target:  5'- cCGUGC-GCCGGuCGCgggcguccaggggcuGGCGCGGGgcgGGa -3'
miRNA:   3'- -GCGCGaCGGCCuGCG---------------CCGUGUCCa--CC- -5'
5117 5' -62 NC_001798.1 + 122066 0.7 0.46285
Target:  5'- gGCGC-GUCGGACGCGGagGCGGuGcUGGc -3'
miRNA:   3'- gCGCGaCGGCCUGCGCCg-UGUC-C-ACC- -5'
5117 5' -62 NC_001798.1 + 69511 0.7 0.46285
Target:  5'- aCGCGCcggaGCgGGGCGUGGCccgcgagcucgcGCGGGcUGGu -3'
miRNA:   3'- -GCGCGa---CGgCCUGCGCCG------------UGUCC-ACC- -5'
5117 5' -62 NC_001798.1 + 24041 0.69 0.47174
Target:  5'- cCGCGCguggcGCCcggGGACGUGGCGCuGGa-- -3'
miRNA:   3'- -GCGCGa----CGG---CCUGCGCCGUGuCCacc -5'
5117 5' -62 NC_001798.1 + 61 0.69 0.47174
Target:  5'- gGCGCgaaGgCGGGCgGCGGCgGCGGGcGGg -3'
miRNA:   3'- gCGCGa--CgGCCUG-CGCCG-UGUCCaCC- -5'
5117 5' -62 NC_001798.1 + 154399 0.69 0.47174
Target:  5'- gGCGCgaaGgCGGGCgGCGGCgGCGGGcGGg -3'
miRNA:   3'- gCGCGa--CgGCCUG-CGCCG-UGUCCaCC- -5'
5117 5' -62 NC_001798.1 + 36133 0.69 0.480715
Target:  5'- cCGCGaucccGCCGGugG-GGCGCggcggcggucgGGGUGGg -3'
miRNA:   3'- -GCGCga---CGGCCugCgCCGUG-----------UCCACC- -5'
5117 5' -62 NC_001798.1 + 39798 0.69 0.480715
Target:  5'- gGCGCgaccacacGCCGGugGU--CGCGGGUGGc -3'
miRNA:   3'- gCGCGa-------CGGCCugCGccGUGUCCACC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.