Results 41 - 60 of 175 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
5117 | 5' | -62 | NC_001798.1 | + | 96344 | 0.67 | 0.632607 |
Target: 5'- gCGUGCUGCgGcGGCaccuGCGGC-CGGGgcUGGa -3' miRNA: 3'- -GCGCGACGgC-CUG----CGCCGuGUCC--ACC- -5' |
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5117 | 5' | -62 | NC_001798.1 | + | 117258 | 0.67 | 0.629683 |
Target: 5'- gCGCGC-GUCGGAgGCGuacuuucugggccaGCucCAGGUGGc -3' miRNA: 3'- -GCGCGaCGGCCUgCGC--------------CGu-GUCCACC- -5' |
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5117 | 5' | -62 | NC_001798.1 | + | 2547 | 0.67 | 0.629683 |
Target: 5'- gGCGCgGCCcccgcgggaggggcGGcCGCGGgGCGGG-GGg -3' miRNA: 3'- gCGCGaCGG--------------CCuGCGCCgUGUCCaCC- -5' |
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5117 | 5' | -62 | NC_001798.1 | + | 47064 | 0.67 | 0.62286 |
Target: 5'- aCGCGCaaUGCCgGGGCGaCaGCGCcGGUGu -3' miRNA: 3'- -GCGCG--ACGG-CCUGC-GcCGUGuCCACc -5' |
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5117 | 5' | -62 | NC_001798.1 | + | 19974 | 0.67 | 0.62286 |
Target: 5'- cCGCGauagccccGCCGGACGCGGauucCGGGUu- -3' miRNA: 3'- -GCGCga------CGGCCUGCGCCgu--GUCCAcc -5' |
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5117 | 5' | -62 | NC_001798.1 | + | 32793 | 0.67 | 0.62286 |
Target: 5'- cCGCGCcgGCCGGcgacgccccCGCGGgcCACGGGgaguagGGg -3' miRNA: 3'- -GCGCGa-CGGCCu--------GCGCC--GUGUCCa-----CC- -5' |
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5117 | 5' | -62 | NC_001798.1 | + | 91615 | 0.67 | 0.62286 |
Target: 5'- cCGCGCUuaUGGGCGgcCGGCcgccCGGGUGa -3' miRNA: 3'- -GCGCGAcgGCCUGC--GCCGu---GUCCACc -5' |
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5117 | 5' | -62 | NC_001798.1 | + | 125411 | 0.67 | 0.62286 |
Target: 5'- cCGCGCgacgGCCGaGAagaGCGGCgagugcucgcaGCAGucGUGGa -3' miRNA: 3'- -GCGCGa---CGGC-CUg--CGCCG-----------UGUC--CACC- -5' |
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5117 | 5' | -62 | NC_001798.1 | + | 153022 | 0.67 | 0.621885 |
Target: 5'- gGCGgaGuCCGGGCccgcgcgGCGGCGCGcGGuUGGc -3' miRNA: 3'- gCGCgaC-GGCCUG-------CGCCGUGU-CC-ACC- -5' |
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5117 | 5' | -62 | NC_001798.1 | + | 24513 | 0.67 | 0.618962 |
Target: 5'- cCGCGCcgGCCGGggccgacgacgacgACGacgacgacggcgcCGGCGguGGUGGc -3' miRNA: 3'- -GCGCGa-CGGCC--------------UGC-------------GCCGUguCCACC- -5' |
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5117 | 5' | -62 | NC_001798.1 | + | 51322 | 0.67 | 0.613119 |
Target: 5'- aCGCGaCguuuugggGCgGGugGgCGGUucGCGGGUGGu -3' miRNA: 3'- -GCGC-Ga-------CGgCCugC-GCCG--UGUCCACC- -5' |
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5117 | 5' | -62 | NC_001798.1 | + | 77240 | 0.67 | 0.613119 |
Target: 5'- gGCGCccUGgCGGACGCGGUGuCGGcccUGGg -3' miRNA: 3'- gCGCG--ACgGCCUGCGCCGU-GUCc--ACC- -5' |
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5117 | 5' | -62 | NC_001798.1 | + | 88235 | 0.67 | 0.613119 |
Target: 5'- gGCGCuUGuuGGuguACGC-GCGCGGGUGu -3' miRNA: 3'- gCGCG-ACggCC---UGCGcCGUGUCCACc -5' |
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5117 | 5' | -62 | NC_001798.1 | + | 31652 | 0.67 | 0.613119 |
Target: 5'- uGCGa-GCgCGGACGCGGC-CGGGc-- -3' miRNA: 3'- gCGCgaCG-GCCUGCGCCGuGUCCacc -5' |
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5117 | 5' | -62 | NC_001798.1 | + | 85261 | 0.67 | 0.613119 |
Target: 5'- cCGCGCgggGCCGcGCGCgaGGCuuCGGGgGGg -3' miRNA: 3'- -GCGCGa--CGGCcUGCG--CCGu-GUCCaCC- -5' |
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5117 | 5' | -62 | NC_001798.1 | + | 153664 | 0.67 | 0.612145 |
Target: 5'- cCGCGCgGCgcguccgCGGGCGgGGaCGCGGG-GGc -3' miRNA: 3'- -GCGCGaCG-------GCCUGCgCC-GUGUCCaCC- -5' |
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5117 | 5' | -62 | NC_001798.1 | + | 43935 | 0.67 | 0.603391 |
Target: 5'- gGCGaacgagGUCaaGGACGCGGCACugaGGGUGu -3' miRNA: 3'- gCGCga----CGG--CCUGCGCCGUG---UCCACc -5' |
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5117 | 5' | -62 | NC_001798.1 | + | 151604 | 0.67 | 0.603391 |
Target: 5'- gGCGCUcgGCCGGGgGCcgGGC-CGGG-GGc -3' miRNA: 3'- gCGCGA--CGGCCUgCG--CCGuGUCCaCC- -5' |
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5117 | 5' | -62 | NC_001798.1 | + | 141470 | 0.67 | 0.603391 |
Target: 5'- aGCuGCUGaCCGGcuCGCcGCGCGGG-GGg -3' miRNA: 3'- gCG-CGAC-GGCCu-GCGcCGUGUCCaCC- -5' |
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5117 | 5' | -62 | NC_001798.1 | + | 125655 | 0.67 | 0.603391 |
Target: 5'- gCGgGCgaGgCGGGgGCGGCugAGGUcaGGg -3' miRNA: 3'- -GCgCGa-CgGCCUgCGCCGugUCCA--CC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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