miRNA display CGI


Results 41 - 60 of 175 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5117 5' -62 NC_001798.1 + 77240 0.67 0.613119
Target:  5'- gGCGCccUGgCGGACGCGGUGuCGGcccUGGg -3'
miRNA:   3'- gCGCG--ACgGCCUGCGCCGU-GUCc--ACC- -5'
5117 5' -62 NC_001798.1 + 51322 0.67 0.613119
Target:  5'- aCGCGaCguuuugggGCgGGugGgCGGUucGCGGGUGGu -3'
miRNA:   3'- -GCGC-Ga-------CGgCCugC-GCCG--UGUCCACC- -5'
5117 5' -62 NC_001798.1 + 153664 0.67 0.612145
Target:  5'- cCGCGCgGCgcguccgCGGGCGgGGaCGCGGG-GGc -3'
miRNA:   3'- -GCGCGaCG-------GCCUGCgCC-GUGUCCaCC- -5'
5117 5' -62 NC_001798.1 + 51775 0.67 0.603391
Target:  5'- cCGCGCgauggguuuucUGgUGGACGCcaucGUGCGGGUGGc -3'
miRNA:   3'- -GCGCG-----------ACgGCCUGCGc---CGUGUCCACC- -5'
5117 5' -62 NC_001798.1 + 43935 0.67 0.603391
Target:  5'- gGCGaacgagGUCaaGGACGCGGCACugaGGGUGu -3'
miRNA:   3'- gCGCga----CGG--CCUGCGCCGUG---UCCACc -5'
5117 5' -62 NC_001798.1 + 151604 0.67 0.603391
Target:  5'- gGCGCUcgGCCGGGgGCcgGGC-CGGG-GGc -3'
miRNA:   3'- gCGCGA--CGGCCUgCG--CCGuGUCCaCC- -5'
5117 5' -62 NC_001798.1 + 141470 0.67 0.603391
Target:  5'- aGCuGCUGaCCGGcuCGCcGCGCGGG-GGg -3'
miRNA:   3'- gCG-CGAC-GGCCu-GCGcCGUGUCCaCC- -5'
5117 5' -62 NC_001798.1 + 125655 0.67 0.603391
Target:  5'- gCGgGCgaGgCGGGgGCGGCugAGGUcaGGg -3'
miRNA:   3'- -GCgCGa-CgGCCUgCGCCGugUCCA--CC- -5'
5117 5' -62 NC_001798.1 + 24513 0.67 0.618962
Target:  5'- cCGCGCcgGCCGGggccgacgacgacgACGacgacgacggcgcCGGCGguGGUGGc -3'
miRNA:   3'- -GCGCGa-CGGCC--------------UGC-------------GCCGUguCCACC- -5'
5117 5' -62 NC_001798.1 + 153022 0.67 0.621885
Target:  5'- gGCGgaGuCCGGGCccgcgcgGCGGCGCGcGGuUGGc -3'
miRNA:   3'- gCGCgaC-GGCCUG-------CGCCGUGU-CC-ACC- -5'
5117 5' -62 NC_001798.1 + 64331 0.67 0.632607
Target:  5'- cCGCGCUuauauGCgUGGACGagaaGGCGgaccaGGGUGGa -3'
miRNA:   3'- -GCGCGA-----CG-GCCUGCg---CCGUg----UCCACC- -5'
5117 5' -62 NC_001798.1 + 94991 0.67 0.632607
Target:  5'- gGCgGCcGCCuGGGCcccgcaggGCGGCGCGGGccUGGa -3'
miRNA:   3'- gCG-CGaCGG-CCUG--------CGCCGUGUCC--ACC- -5'
5117 5' -62 NC_001798.1 + 4627 0.67 0.632607
Target:  5'- uCGCGCU-CCGGGgGgGGCgACGGGa-- -3'
miRNA:   3'- -GCGCGAcGGCCUgCgCCG-UGUCCacc -5'
5117 5' -62 NC_001798.1 + 117258 0.67 0.629683
Target:  5'- gCGCGC-GUCGGAgGCGuacuuucugggccaGCucCAGGUGGc -3'
miRNA:   3'- -GCGCGaCGGCCUgCGC--------------CGu-GUCCACC- -5'
5117 5' -62 NC_001798.1 + 2547 0.67 0.629683
Target:  5'- gGCGCgGCCcccgcgggaggggcGGcCGCGGgGCGGG-GGg -3'
miRNA:   3'- gCGCGaCGG--------------CCuGCGCCgUGUCCaCC- -5'
5117 5' -62 NC_001798.1 + 125411 0.67 0.62286
Target:  5'- cCGCGCgacgGCCGaGAagaGCGGCgagugcucgcaGCAGucGUGGa -3'
miRNA:   3'- -GCGCGa---CGGC-CUg--CGCCG-----------UGUC--CACC- -5'
5117 5' -62 NC_001798.1 + 91615 0.67 0.62286
Target:  5'- cCGCGCUuaUGGGCGgcCGGCcgccCGGGUGa -3'
miRNA:   3'- -GCGCGAcgGCCUGC--GCCGu---GUCCACc -5'
5117 5' -62 NC_001798.1 + 32793 0.67 0.62286
Target:  5'- cCGCGCcgGCCGGcgacgccccCGCGGgcCACGGGgaguagGGg -3'
miRNA:   3'- -GCGCGa-CGGCCu--------GCGCC--GUGUCCa-----CC- -5'
5117 5' -62 NC_001798.1 + 19974 0.67 0.62286
Target:  5'- cCGCGauagccccGCCGGACGCGGauucCGGGUu- -3'
miRNA:   3'- -GCGCga------CGGCCUGCGCCgu--GUCCAcc -5'
5117 5' -62 NC_001798.1 + 47064 0.67 0.62286
Target:  5'- aCGCGCaaUGCCgGGGCGaCaGCGCcGGUGu -3'
miRNA:   3'- -GCGCG--ACGG-CCUGC-GcCGUGuCCACc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.