miRNA display CGI


Results 21 - 40 of 175 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5117 5' -62 NC_001798.1 + 86251 0.66 0.661819
Target:  5'- cCGUGCUgaagcacgGCCGGggGCGCGGgCGCAccGGcGGg -3'
miRNA:   3'- -GCGCGA--------CGGCC--UGCGCC-GUGU--CCaCC- -5'
5117 5' -62 NC_001798.1 + 52283 0.66 0.661819
Target:  5'- cCGCGUUugCGGACGUGGaGCAGGaGGc -3'
miRNA:   3'- -GCGCGAcgGCCUGCGCCgUGUCCaCC- -5'
5117 5' -62 NC_001798.1 + 77502 0.66 0.661819
Target:  5'- -cCGCUGCuCGGgaaagccucGCGgGGCACgAGGcUGGg -3'
miRNA:   3'- gcGCGACG-GCC---------UGCgCCGUG-UCC-ACC- -5'
5117 5' -62 NC_001798.1 + 102741 0.66 0.661819
Target:  5'- aCGCGCa--CGGACggcgaccuGCGGCGCGGGa-- -3'
miRNA:   3'- -GCGCGacgGCCUG--------CGCCGUGUCCacc -5'
5117 5' -62 NC_001798.1 + 122204 0.66 0.661819
Target:  5'- cCGCGaucGCUGGucgaGUGGCuggaccGCGGGUGGg -3'
miRNA:   3'- -GCGCga-CGGCCug--CGCCG------UGUCCACC- -5'
5117 5' -62 NC_001798.1 + 51839 0.66 0.660847
Target:  5'- aCGCGcCUGCacacggagGGGCGCGGCucggagcucgacgACAGGgcGGc -3'
miRNA:   3'- -GCGC-GACGg-------CCUGCGCCG-------------UGUCCa-CC- -5'
5117 5' -62 NC_001798.1 + 26189 0.66 0.660847
Target:  5'- gGCGCUggacgGCCGGGcCGCcgccucgGGCGCGGGcgacgccaUGGc -3'
miRNA:   3'- gCGCGA-----CGGCCU-GCG-------CCGUGUCC--------ACC- -5'
5117 5' -62 NC_001798.1 + 12862 0.66 0.660847
Target:  5'- gGUGgUGUCGGACagcuccgGCGGCAgCAGGgugcUGGu -3'
miRNA:   3'- gCGCgACGGCCUG-------CGCCGU-GUCC----ACC- -5'
5117 5' -62 NC_001798.1 + 34824 0.66 0.655986
Target:  5'- cCGCGCUccgccgggggcccggGCCGGAcCGCcGgGCGGG-GGa -3'
miRNA:   3'- -GCGCGA---------------CGGCCU-GCGcCgUGUCCaCC- -5'
5117 5' -62 NC_001798.1 + 24282 0.66 0.652094
Target:  5'- aCGCGCcccUGCUGGcgcgcgagaACGCGGCGCugaccGG-GGc -3'
miRNA:   3'- -GCGCG---ACGGCC---------UGCGCCGUGu----CCaCC- -5'
5117 5' -62 NC_001798.1 + 131349 0.66 0.652094
Target:  5'- gGCGCgacGUCGGcgcccgGCGCGGCcuCGGG-GGa -3'
miRNA:   3'- gCGCGa--CGGCC------UGCGCCGu-GUCCaCC- -5'
5117 5' -62 NC_001798.1 + 78570 0.66 0.652094
Target:  5'- gGCGCUgGCCGcGCGCGaGCGCcGGg-- -3'
miRNA:   3'- gCGCGA-CGGCcUGCGC-CGUGuCCacc -5'
5117 5' -62 NC_001798.1 + 4215 0.66 0.642354
Target:  5'- gGCGCUGgCGGG---GGCGCGGGcGGc -3'
miRNA:   3'- gCGCGACgGCCUgcgCCGUGUCCaCC- -5'
5117 5' -62 NC_001798.1 + 23948 0.66 0.642354
Target:  5'- gGCGCcgaGCUGGgcgACGCGGCGCAGc--- -3'
miRNA:   3'- gCGCGa--CGGCC---UGCGCCGUGUCcacc -5'
5117 5' -62 NC_001798.1 + 27165 0.66 0.642354
Target:  5'- gGgGCUGCUgcgagcucgGGGcCGCgGGCGCGGG-GGg -3'
miRNA:   3'- gCgCGACGG---------CCU-GCG-CCGUGUCCaCC- -5'
5117 5' -62 NC_001798.1 + 2677 0.66 0.642354
Target:  5'- gCGCGgaGgCGGGCGCGGCgaGCGaGUcGGc -3'
miRNA:   3'- -GCGCgaCgGCCUGCGCCG--UGUcCA-CC- -5'
5117 5' -62 NC_001798.1 + 151673 0.66 0.642354
Target:  5'- cCGUGCUGCCcgccucGGAgGUGGguCGcGGUGa -3'
miRNA:   3'- -GCGCGACGG------CCUgCGCCguGU-CCACc -5'
5117 5' -62 NC_001798.1 + 64331 0.67 0.632607
Target:  5'- cCGCGCUuauauGCgUGGACGagaaGGCGgaccaGGGUGGa -3'
miRNA:   3'- -GCGCGA-----CG-GCCUGCg---CCGUg----UCCACC- -5'
5117 5' -62 NC_001798.1 + 94991 0.67 0.632607
Target:  5'- gGCgGCcGCCuGGGCcccgcaggGCGGCGCGGGccUGGa -3'
miRNA:   3'- gCG-CGaCGG-CCUG--------CGCCGUGUCC--ACC- -5'
5117 5' -62 NC_001798.1 + 4627 0.67 0.632607
Target:  5'- uCGCGCU-CCGGGgGgGGCgACGGGa-- -3'
miRNA:   3'- -GCGCGAcGGCCUgCgCCG-UGUCCacc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.