miRNA display CGI


Results 21 - 40 of 175 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5117 5' -62 NC_001798.1 + 15563 0.73 0.2997
Target:  5'- gGCGUUGCCGccgcCGCGGCGgGGaGUGGc -3'
miRNA:   3'- gCGCGACGGCcu--GCGCCGUgUC-CACC- -5'
5117 5' -62 NC_001798.1 + 4372 0.73 0.306368
Target:  5'- gCGCGCcgGCggCGGugGUGGUGguGGUGGu -3'
miRNA:   3'- -GCGCGa-CG--GCCugCGCCGUguCCACC- -5'
5117 5' -62 NC_001798.1 + 154070 0.73 0.306368
Target:  5'- aGCGC--CgGGGCGCGGCACGGcUGGa -3'
miRNA:   3'- gCGCGacGgCCUGCGCCGUGUCcACC- -5'
5117 5' -62 NC_001798.1 + 97453 0.72 0.327048
Target:  5'- uGCGCcgcgUGCUGG-CGCGGCugGGGgccGGc -3'
miRNA:   3'- gCGCG----ACGGCCuGCGCCGugUCCa--CC- -5'
5117 5' -62 NC_001798.1 + 98554 0.72 0.327048
Target:  5'- gCGCGCUGgUcGugGgGGCGCuGGUGGc -3'
miRNA:   3'- -GCGCGACgGcCugCgCCGUGuCCACC- -5'
5117 5' -62 NC_001798.1 + 149649 0.72 0.334168
Target:  5'- aGCGCgugagGCCGGGCGCcgGGuCGCGGGccccGGg -3'
miRNA:   3'- gCGCGa----CGGCCUGCG--CC-GUGUCCa---CC- -5'
5117 5' -62 NC_001798.1 + 145801 0.72 0.3414
Target:  5'- gCGCGCggGCggcagaaacgCGGGCGCGGCGgCggucgGGGUGGg -3'
miRNA:   3'- -GCGCGa-CG----------GCCUGCGCCGU-G-----UCCACC- -5'
5117 5' -62 NC_001798.1 + 3207 0.72 0.348745
Target:  5'- gCGCGgaGgCGGGCGCGGCGCucaggcgccccaGGGcGGc -3'
miRNA:   3'- -GCGCgaCgGCCUGCGCCGUG------------UCCaCC- -5'
5117 5' -62 NC_001798.1 + 23990 0.72 0.348745
Target:  5'- aCGCgGCUgcuguacacGCCGGACGCGGagGCgaugGGGUGGc -3'
miRNA:   3'- -GCG-CGA---------CGGCCUGCGCCg-UG----UCCACC- -5'
5117 5' -62 NC_001798.1 + 102211 0.72 0.348745
Target:  5'- gCGCGCcgggagucGaCCGGGCGCGGCuCGGGgcgGGc -3'
miRNA:   3'- -GCGCGa-------C-GGCCUGCGCCGuGUCCa--CC- -5'
5117 5' -62 NC_001798.1 + 148036 0.72 0.348745
Target:  5'- cCGCGUggGCgCGGGCGgGGgGguGGUGGu -3'
miRNA:   3'- -GCGCGa-CG-GCCUGCgCCgUguCCACC- -5'
5117 5' -62 NC_001798.1 + 26501 0.71 0.36377
Target:  5'- cCGCGCggggacggUGCUGGcCGCGGCgggcgGCGGcGUGGa -3'
miRNA:   3'- -GCGCG--------ACGGCCuGCGCCG-----UGUC-CACC- -5'
5117 5' -62 NC_001798.1 + 31783 0.71 0.368364
Target:  5'- aCGCGCgcgggucgggaggGCCGGGCGCGGa--GGGaGGa -3'
miRNA:   3'- -GCGCGa------------CGGCCUGCGCCgugUCCaCC- -5'
5117 5' -62 NC_001798.1 + 1711 0.71 0.371449
Target:  5'- -aCGCgGCCGGAggccagcacggUGCGGCGCAGGUc- -3'
miRNA:   3'- gcGCGaCGGCCU-----------GCGCCGUGUCCAcc -5'
5117 5' -62 NC_001798.1 + 8887 0.71 0.371449
Target:  5'- gGCGCUGgCGGAgGgcggaGGCGaAGGUGGg -3'
miRNA:   3'- gCGCGACgGCCUgCg----CCGUgUCCACC- -5'
5117 5' -62 NC_001798.1 + 91083 0.71 0.379238
Target:  5'- gGCGC-GCCGGAgGCGGC-CGucGUGGa -3'
miRNA:   3'- gCGCGaCGGCCUgCGCCGuGUc-CACC- -5'
5117 5' -62 NC_001798.1 + 2509 0.71 0.387135
Target:  5'- gGCGCggcgGCCGcGGCgGCGGCgucgGCGGGgcgGGg -3'
miRNA:   3'- gCGCGa---CGGC-CUG-CGCCG----UGUCCa--CC- -5'
5117 5' -62 NC_001798.1 + 4842 0.71 0.387135
Target:  5'- cCGCGCgGCgGGGCGaCGGUcCGGGUucGGg -3'
miRNA:   3'- -GCGCGaCGgCCUGC-GCCGuGUCCA--CC- -5'
5117 5' -62 NC_001798.1 + 135232 0.71 0.403251
Target:  5'- cCGgGCUGCCGGAaGCccgGGgGCGGGcGGg -3'
miRNA:   3'- -GCgCGACGGCCUgCG---CCgUGUCCaCC- -5'
5117 5' -62 NC_001798.1 + 144070 0.7 0.411467
Target:  5'- uGCGCcugGCCGGGaugGUGGUACGGGUc- -3'
miRNA:   3'- gCGCGa--CGGCCUg--CGCCGUGUCCAcc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.