miRNA display CGI


Results 1 - 20 of 175 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5117 5' -62 NC_001798.1 + 142129 1.09 0.000941
Target:  5'- gCGCGCUGCCGGACGCGGCACAGGUGGu -3'
miRNA:   3'- -GCGCGACGGCCUGCGCCGUGUCCACC- -5'
5117 5' -62 NC_001798.1 + 36060 0.82 0.073747
Target:  5'- gCGUGCUGCCGGaggcugcggGCGCGGggUAGGUGGg -3'
miRNA:   3'- -GCGCGACGGCC---------UGCGCCguGUCCACC- -5'
5117 5' -62 NC_001798.1 + 154044 0.81 0.092662
Target:  5'- aGCGC-GCCGGGgCGCGGCACGGcUGGa -3'
miRNA:   3'- gCGCGaCGGCCU-GCGCCGUGUCcACC- -5'
5117 5' -62 NC_001798.1 + 39847 0.77 0.167792
Target:  5'- cCGCGCUGCCGGGCGaGGCGucgaggcuuCGGG-GGu -3'
miRNA:   3'- -GCGCGACGGCCUGCgCCGU---------GUCCaCC- -5'
5117 5' -62 NC_001798.1 + 20356 0.77 0.167792
Target:  5'- gGCGCUGCCGGGCggguucgggGCGGCacGCAGGa-- -3'
miRNA:   3'- gCGCGACGGCCUG---------CGCCG--UGUCCacc -5'
5117 5' -62 NC_001798.1 + 132672 0.75 0.212901
Target:  5'- gGCGCUGCgacgcgucgcaCGccGACGCGGCGCAGGcgcgGGg -3'
miRNA:   3'- gCGCGACG-----------GC--CUGCGCCGUGUCCa---CC- -5'
5117 5' -62 NC_001798.1 + 36400 0.75 0.239149
Target:  5'- gGCGCcggggccccccUGCCGGGCGgGGCGguGGggcgGGg -3'
miRNA:   3'- gCGCG-----------ACGGCCUGCgCCGUguCCa---CC- -5'
5117 5' -62 NC_001798.1 + 2307 0.74 0.250957
Target:  5'- gCGCGCgggucgaacaugaggGCCGGGCGCcacGGCgcggggaagaGCGGGUGGu -3'
miRNA:   3'- -GCGCGa--------------CGGCCUGCG---CCG----------UGUCCACC- -5'
5117 5' -62 NC_001798.1 + 85988 0.74 0.26205
Target:  5'- gGcCGCcGCCgGGGCGCuGGCGCAGGgGGg -3'
miRNA:   3'- gC-GCGaCGG-CCUGCG-CCGUGUCCaCC- -5'
5117 5' -62 NC_001798.1 + 36607 0.74 0.268048
Target:  5'- gCGCGCggcgGCCGGgcgggggcGCGCGGCGgcCGGGcGGg -3'
miRNA:   3'- -GCGCGa---CGGCC--------UGCGCCGU--GUCCaCC- -5'
5117 5' -62 NC_001798.1 + 36523 0.74 0.268048
Target:  5'- gCGCGCggcgGCCGGgcgggggcGCGCGGCGgcCGGGcGGg -3'
miRNA:   3'- -GCGCGa---CGGCC--------UGCGCCGU--GUCCaCC- -5'
5117 5' -62 NC_001798.1 + 130519 0.74 0.268048
Target:  5'- cCGaCGaUGCCGGugGCGGCGauggccccgAGGUGGg -3'
miRNA:   3'- -GC-GCgACGGCCugCGCCGUg--------UCCACC- -5'
5117 5' -62 NC_001798.1 + 14344 0.74 0.268048
Target:  5'- uCGCGUuuguUGUauCGGACGCGGgGCcGGUGGg -3'
miRNA:   3'- -GCGCG----ACG--GCCUGCGCCgUGuCCACC- -5'
5117 5' -62 NC_001798.1 + 36565 0.74 0.268048
Target:  5'- gCGCGCggcgGCCGGgcgggggcGCGCGGCGgcCGGGcGGg -3'
miRNA:   3'- -GCGCGa---CGGCC--------UGCGCCGU--GUCCaCC- -5'
5117 5' -62 NC_001798.1 + 128240 0.74 0.268048
Target:  5'- uCGUGUcGCUGGAgGCGGCcgGCAuGGUGGa -3'
miRNA:   3'- -GCGCGaCGGCCUgCGCCG--UGU-CCACC- -5'
5117 5' -62 NC_001798.1 + 35584 0.74 0.274155
Target:  5'- gGCGCUGCuCGGcUGCGGCcGCGGGcuccgGGg -3'
miRNA:   3'- gCGCGACG-GCCuGCGCCG-UGUCCa----CC- -5'
5117 5' -62 NC_001798.1 + 72809 0.74 0.276629
Target:  5'- gCGCGCUggcggcgccucucgGCCGGcuaucaggccgcacGCGCGGCACgggccccgagcGGGUGGc -3'
miRNA:   3'- -GCGCGA--------------CGGCC--------------UGCGCCGUG-----------UCCACC- -5'
5117 5' -62 NC_001798.1 + 23659 0.73 0.280374
Target:  5'- aGCGCcGCCGGgcccGCGCGGCGguGGccGGc -3'
miRNA:   3'- gCGCGaCGGCC----UGCGCCGUguCCa-CC- -5'
5117 5' -62 NC_001798.1 + 3422 0.73 0.280374
Target:  5'- uCGCGCgccagcagggGCgCGuaGGCGCGGCGCAGGcUGGu -3'
miRNA:   3'- -GCGCGa---------CG-GC--CUGCGCCGUGUCC-ACC- -5'
5117 5' -62 NC_001798.1 + 12702 0.73 0.293146
Target:  5'- cCGgGUUGCUGGGgGCGGCGgGGGcgUGGu -3'
miRNA:   3'- -GCgCGACGGCCUgCGCCGUgUCC--ACC- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.