Results 1 - 20 of 175 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
5117 | 5' | -62 | NC_001798.1 | + | 61 | 0.69 | 0.47174 |
Target: 5'- gGCGCgaaGgCGGGCgGCGGCgGCGGGcGGg -3' miRNA: 3'- gCGCGa--CgGCCUG-CGCCG-UGUCCaCC- -5' |
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5117 | 5' | -62 | NC_001798.1 | + | 1711 | 0.71 | 0.371449 |
Target: 5'- -aCGCgGCCGGAggccagcacggUGCGGCGCAGGUc- -3' miRNA: 3'- gcGCGaCGGCCU-----------GCGCCGUGUCCAcc -5' |
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5117 | 5' | -62 | NC_001798.1 | + | 1746 | 0.67 | 0.583999 |
Target: 5'- cCGCGCcGCCGGccaGCGCacGGCGCAcugcacGGcGGg -3' miRNA: 3'- -GCGCGaCGGCC---UGCG--CCGUGU------CCaCC- -5' |
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5117 | 5' | -62 | NC_001798.1 | + | 2194 | 0.68 | 0.564733 |
Target: 5'- gGCGCauccagGCCGccGCGCGGCGCAGcG-GGc -3' miRNA: 3'- gCGCGa-----CGGCc-UGCGCCGUGUC-CaCC- -5' |
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5117 | 5' | -62 | NC_001798.1 | + | 2257 | 0.67 | 0.583999 |
Target: 5'- gCGCGCcGCCGGGgggcgggGCGGCGCAGcGcgcGGc -3' miRNA: 3'- -GCGCGaCGGCCUg------CGCCGUGUC-Ca--CC- -5' |
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5117 | 5' | -62 | NC_001798.1 | + | 2307 | 0.74 | 0.250957 |
Target: 5'- gCGCGCgggucgaacaugaggGCCGGGCGCcacGGCgcggggaagaGCGGGUGGu -3' miRNA: 3'- -GCGCGa--------------CGGCCUGCG---CCG----------UGUCCACC- -5' |
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5117 | 5' | -62 | NC_001798.1 | + | 2509 | 0.71 | 0.387135 |
Target: 5'- gGCGCggcgGCCGcGGCgGCGGCgucgGCGGGgcgGGg -3' miRNA: 3'- gCGCGa---CGGC-CUG-CGCCG----UGUCCa--CC- -5' |
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5117 | 5' | -62 | NC_001798.1 | + | 2547 | 0.67 | 0.629683 |
Target: 5'- gGCGCgGCCcccgcgggaggggcGGcCGCGGgGCGGG-GGg -3' miRNA: 3'- gCGCGaCGG--------------CCuGCGCCgUGUCCaCC- -5' |
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5117 | 5' | -62 | NC_001798.1 | + | 2677 | 0.66 | 0.642354 |
Target: 5'- gCGCGgaGgCGGGCGCGGCgaGCGaGUcGGc -3' miRNA: 3'- -GCGCgaCgGCCUGCGCCG--UGUcCA-CC- -5' |
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5117 | 5' | -62 | NC_001798.1 | + | 3207 | 0.72 | 0.348745 |
Target: 5'- gCGCGgaGgCGGGCGCGGCGCucaggcgccccaGGGcGGc -3' miRNA: 3'- -GCGCgaCgGCCUGCGCCGUG------------UCCaCC- -5' |
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5117 | 5' | -62 | NC_001798.1 | + | 3422 | 0.73 | 0.280374 |
Target: 5'- uCGCGCgccagcagggGCgCGuaGGCGCGGCGCAGGcUGGu -3' miRNA: 3'- -GCGCGa---------CG-GC--CUGCGCCGUGUCC-ACC- -5' |
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5117 | 5' | -62 | NC_001798.1 | + | 3656 | 0.66 | 0.671523 |
Target: 5'- aGCGCcacguccCCGGGCGCcacGCGCGGGUucuGGa -3' miRNA: 3'- gCGCGac-----GGCCUGCGc--CGUGUCCA---CC- -5' |
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5117 | 5' | -62 | NC_001798.1 | + | 4215 | 0.66 | 0.642354 |
Target: 5'- gGCGCUGgCGGG---GGCGCGGGcGGc -3' miRNA: 3'- gCGCGACgGCCUgcgCCGUGUCCaCC- -5' |
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5117 | 5' | -62 | NC_001798.1 | + | 4372 | 0.73 | 0.306368 |
Target: 5'- gCGCGCcgGCggCGGugGUGGUGguGGUGGu -3' miRNA: 3'- -GCGCGa-CG--GCCugCGCCGUguCCACC- -5' |
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5117 | 5' | -62 | NC_001798.1 | + | 4412 | 0.7 | 0.445339 |
Target: 5'- gGgGC-GCCGGGgguCGCGGCgACAGGcUGGc -3' miRNA: 3'- gCgCGaCGGCCU---GCGCCG-UGUCC-ACC- -5' |
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5117 | 5' | -62 | NC_001798.1 | + | 4627 | 0.67 | 0.632607 |
Target: 5'- uCGCGCU-CCGGGgGgGGCgACGGGa-- -3' miRNA: 3'- -GCGCGAcGGCCUgCgCCG-UGUCCacc -5' |
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5117 | 5' | -62 | NC_001798.1 | + | 4842 | 0.71 | 0.387135 |
Target: 5'- cCGCGCgGCgGGGCGaCGGUcCGGGUucGGg -3' miRNA: 3'- -GCGCGaCGgCCUGC-GCCGuGUCCA--CC- -5' |
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5117 | 5' | -62 | NC_001798.1 | + | 5757 | 0.66 | 0.670554 |
Target: 5'- cCGCGCUccGCCccaaaggGGGCGgGGCcGCAGGg-- -3' miRNA: 3'- -GCGCGA--CGG-------CCUGCgCCG-UGUCCacc -5' |
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5117 | 5' | -62 | NC_001798.1 | + | 6660 | 0.66 | 0.681197 |
Target: 5'- cCGCGCUuucucgcagGCCGGGCGCcGC-CuucGUGGa -3' miRNA: 3'- -GCGCGA---------CGGCCUGCGcCGuGuc-CACC- -5' |
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5117 | 5' | -62 | NC_001798.1 | + | 8887 | 0.71 | 0.371449 |
Target: 5'- gGCGCUGgCGGAgGgcggaGGCGaAGGUGGg -3' miRNA: 3'- gCGCGACgGCCUgCg----CCGUgUCCACC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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