miRNA display CGI


Results 1 - 20 of 175 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5117 5' -62 NC_001798.1 + 61 0.69 0.47174
Target:  5'- gGCGCgaaGgCGGGCgGCGGCgGCGGGcGGg -3'
miRNA:   3'- gCGCGa--CgGCCUG-CGCCG-UGUCCaCC- -5'
5117 5' -62 NC_001798.1 + 1711 0.71 0.371449
Target:  5'- -aCGCgGCCGGAggccagcacggUGCGGCGCAGGUc- -3'
miRNA:   3'- gcGCGaCGGCCU-----------GCGCCGUGUCCAcc -5'
5117 5' -62 NC_001798.1 + 1746 0.67 0.583999
Target:  5'- cCGCGCcGCCGGccaGCGCacGGCGCAcugcacGGcGGg -3'
miRNA:   3'- -GCGCGaCGGCC---UGCG--CCGUGU------CCaCC- -5'
5117 5' -62 NC_001798.1 + 2194 0.68 0.564733
Target:  5'- gGCGCauccagGCCGccGCGCGGCGCAGcG-GGc -3'
miRNA:   3'- gCGCGa-----CGGCc-UGCGCCGUGUC-CaCC- -5'
5117 5' -62 NC_001798.1 + 2257 0.67 0.583999
Target:  5'- gCGCGCcGCCGGGgggcgggGCGGCGCAGcGcgcGGc -3'
miRNA:   3'- -GCGCGaCGGCCUg------CGCCGUGUC-Ca--CC- -5'
5117 5' -62 NC_001798.1 + 2307 0.74 0.250957
Target:  5'- gCGCGCgggucgaacaugaggGCCGGGCGCcacGGCgcggggaagaGCGGGUGGu -3'
miRNA:   3'- -GCGCGa--------------CGGCCUGCG---CCG----------UGUCCACC- -5'
5117 5' -62 NC_001798.1 + 2509 0.71 0.387135
Target:  5'- gGCGCggcgGCCGcGGCgGCGGCgucgGCGGGgcgGGg -3'
miRNA:   3'- gCGCGa---CGGC-CUG-CGCCG----UGUCCa--CC- -5'
5117 5' -62 NC_001798.1 + 2547 0.67 0.629683
Target:  5'- gGCGCgGCCcccgcgggaggggcGGcCGCGGgGCGGG-GGg -3'
miRNA:   3'- gCGCGaCGG--------------CCuGCGCCgUGUCCaCC- -5'
5117 5' -62 NC_001798.1 + 2677 0.66 0.642354
Target:  5'- gCGCGgaGgCGGGCGCGGCgaGCGaGUcGGc -3'
miRNA:   3'- -GCGCgaCgGCCUGCGCCG--UGUcCA-CC- -5'
5117 5' -62 NC_001798.1 + 3207 0.72 0.348745
Target:  5'- gCGCGgaGgCGGGCGCGGCGCucaggcgccccaGGGcGGc -3'
miRNA:   3'- -GCGCgaCgGCCUGCGCCGUG------------UCCaCC- -5'
5117 5' -62 NC_001798.1 + 3422 0.73 0.280374
Target:  5'- uCGCGCgccagcagggGCgCGuaGGCGCGGCGCAGGcUGGu -3'
miRNA:   3'- -GCGCGa---------CG-GC--CUGCGCCGUGUCC-ACC- -5'
5117 5' -62 NC_001798.1 + 3656 0.66 0.671523
Target:  5'- aGCGCcacguccCCGGGCGCcacGCGCGGGUucuGGa -3'
miRNA:   3'- gCGCGac-----GGCCUGCGc--CGUGUCCA---CC- -5'
5117 5' -62 NC_001798.1 + 4215 0.66 0.642354
Target:  5'- gGCGCUGgCGGG---GGCGCGGGcGGc -3'
miRNA:   3'- gCGCGACgGCCUgcgCCGUGUCCaCC- -5'
5117 5' -62 NC_001798.1 + 4372 0.73 0.306368
Target:  5'- gCGCGCcgGCggCGGugGUGGUGguGGUGGu -3'
miRNA:   3'- -GCGCGa-CG--GCCugCGCCGUguCCACC- -5'
5117 5' -62 NC_001798.1 + 4412 0.7 0.445339
Target:  5'- gGgGC-GCCGGGgguCGCGGCgACAGGcUGGc -3'
miRNA:   3'- gCgCGaCGGCCU---GCGCCG-UGUCC-ACC- -5'
5117 5' -62 NC_001798.1 + 4627 0.67 0.632607
Target:  5'- uCGCGCU-CCGGGgGgGGCgACGGGa-- -3'
miRNA:   3'- -GCGCGAcGGCCUgCgCCG-UGUCCacc -5'
5117 5' -62 NC_001798.1 + 4842 0.71 0.387135
Target:  5'- cCGCGCgGCgGGGCGaCGGUcCGGGUucGGg -3'
miRNA:   3'- -GCGCGaCGgCCUGC-GCCGuGUCCA--CC- -5'
5117 5' -62 NC_001798.1 + 5757 0.66 0.670554
Target:  5'- cCGCGCUccGCCccaaaggGGGCGgGGCcGCAGGg-- -3'
miRNA:   3'- -GCGCGA--CGG-------CCUGCgCCG-UGUCCacc -5'
5117 5' -62 NC_001798.1 + 6660 0.66 0.681197
Target:  5'- cCGCGCUuucucgcagGCCGGGCGCcGC-CuucGUGGa -3'
miRNA:   3'- -GCGCGA---------CGGCCUGCGcCGuGuc-CACC- -5'
5117 5' -62 NC_001798.1 + 8887 0.71 0.371449
Target:  5'- gGCGCUGgCGGAgGgcggaGGCGaAGGUGGg -3'
miRNA:   3'- gCGCGACgGCCUgCg----CCGUgUCCACC- -5'
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.