Results 1 - 20 of 175 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand |
Start Position![]() |
R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
5117 | 5' | -62 | NC_001798.1 | + | 154399 | 0.69 | 0.47174 |
Target: 5'- gGCGCgaaGgCGGGCgGCGGCgGCGGGcGGg -3' miRNA: 3'- gCGCGa--CgGCCUG-CGCCG-UGUCCaCC- -5' |
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5117 | 5' | -62 | NC_001798.1 | + | 154070 | 0.73 | 0.306368 |
Target: 5'- aGCGC--CgGGGCGCGGCACGGcUGGa -3' miRNA: 3'- gCGCGacGgCCUGCGCCGUGUCcACC- -5' |
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5117 | 5' | -62 | NC_001798.1 | + | 154044 | 0.81 | 0.092662 |
Target: 5'- aGCGC-GCCGGGgCGCGGCACGGcUGGa -3' miRNA: 3'- gCGCGaCGGCCU-GCGCCGUGUCcACC- -5' |
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5117 | 5' | -62 | NC_001798.1 | + | 153775 | 0.68 | 0.545637 |
Target: 5'- gGCGCUG-CGGcccgcgcuccuuGCGCGGCggcgGCGGG-GGg -3' miRNA: 3'- gCGCGACgGCC------------UGCGCCG----UGUCCaCC- -5' |
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5117 | 5' | -62 | NC_001798.1 | + | 153664 | 0.67 | 0.612145 |
Target: 5'- cCGCGCgGCgcguccgCGGGCGgGGaCGCGGG-GGc -3' miRNA: 3'- -GCGCGaCG-------GCCUGCgCC-GUGUCCaCC- -5' |
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5117 | 5' | -62 | NC_001798.1 | + | 153022 | 0.67 | 0.621885 |
Target: 5'- gGCGgaGuCCGGGCccgcgcgGCGGCGCGcGGuUGGc -3' miRNA: 3'- gCGCgaC-GGCCUG-------CGCCGUGU-CC-ACC- -5' |
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5117 | 5' | -62 | NC_001798.1 | + | 152644 | 0.69 | 0.489773 |
Target: 5'- gGCGCcccGCCGG-CGCGGCcCuGaGUGGu -3' miRNA: 3'- gCGCGa--CGGCCuGCGCCGuGuC-CACC- -5' |
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5117 | 5' | -62 | NC_001798.1 | + | 151673 | 0.66 | 0.642354 |
Target: 5'- cCGUGCUGCCcgccucGGAgGUGGguCGcGGUGa -3' miRNA: 3'- -GCGCGACGG------CCUgCGCCguGU-CCACc -5' |
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5117 | 5' | -62 | NC_001798.1 | + | 151604 | 0.67 | 0.603391 |
Target: 5'- gGCGCUcgGCCGGGgGCcgGGC-CGGG-GGc -3' miRNA: 3'- gCGCGA--CGGCCUgCG--CCGuGUCCaCC- -5' |
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5117 | 5' | -62 | NC_001798.1 | + | 150849 | 0.69 | 0.517404 |
Target: 5'- gGCGCcgGUCGGGuCGCGGC--GGGcUGGg -3' miRNA: 3'- gCGCGa-CGGCCU-GCGCCGugUCC-ACC- -5' |
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5117 | 5' | -62 | NC_001798.1 | + | 149649 | 0.72 | 0.334168 |
Target: 5'- aGCGCgugagGCCGGGCGCcgGGuCGCGGGccccGGg -3' miRNA: 3'- gCGCGa----CGGCCUGCG--CC-GUGUCCa---CC- -5' |
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5117 | 5' | -62 | NC_001798.1 | + | 149251 | 0.66 | 0.681197 |
Target: 5'- gGCGUcGCCGG-C-CGGCGCGGGc-- -3' miRNA: 3'- gCGCGaCGGCCuGcGCCGUGUCCacc -5' |
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5117 | 5' | -62 | NC_001798.1 | + | 148409 | 0.69 | 0.517404 |
Target: 5'- gCGgGCggGgUGGGCGCcggGGCGgGGGUGGg -3' miRNA: 3'- -GCgCGa-CgGCCUGCG---CCGUgUCCACC- -5' |
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5117 | 5' | -62 | NC_001798.1 | + | 148377 | 0.66 | 0.681197 |
Target: 5'- gGUGaggaggGgCGGGCGUGGCggGCAGGUGu -3' miRNA: 3'- gCGCga----CgGCCUGCGCCG--UGUCCACc -5' |
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5117 | 5' | -62 | NC_001798.1 | + | 148036 | 0.72 | 0.348745 |
Target: 5'- cCGCGUggGCgCGGGCGgGGgGguGGUGGu -3' miRNA: 3'- -GCGCGa-CG-GCCUGCgCCgUguCCACC- -5' |
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5117 | 5' | -62 | NC_001798.1 | + | 145801 | 0.72 | 0.3414 |
Target: 5'- gCGCGCggGCggcagaaacgCGGGCGCGGCGgCggucgGGGUGGg -3' miRNA: 3'- -GCGCGa-CG----------GCCUGCGCCGU-G-----UCCACC- -5' |
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5117 | 5' | -62 | NC_001798.1 | + | 144070 | 0.7 | 0.411467 |
Target: 5'- uGCGCcugGCCGGGaugGUGGUACGGGUc- -3' miRNA: 3'- gCGCGa--CGGCCUg--CGCCGUGUCCAcc -5' |
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5117 | 5' | -62 | NC_001798.1 | + | 142129 | 1.09 | 0.000941 |
Target: 5'- gCGCGCUGCCGGACGCGGCACAGGUGGu -3' miRNA: 3'- -GCGCGACGGCCUGCGCCGUGUCCACC- -5' |
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5117 | 5' | -62 | NC_001798.1 | + | 141470 | 0.67 | 0.603391 |
Target: 5'- aGCuGCUGaCCGGcuCGCcGCGCGGG-GGg -3' miRNA: 3'- gCG-CGAC-GGCCu-GCGcCGUGUCCaCC- -5' |
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5117 | 5' | -62 | NC_001798.1 | + | 137454 | 0.69 | 0.480715 |
Target: 5'- aCGCGCUcGcCCGGAaauCGGCGgGGGUuGGg -3' miRNA: 3'- -GCGCGA-C-GGCCUgc-GCCGUgUCCA-CC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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