miRNA display CGI


Results 1 - 20 of 175 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5117 5' -62 NC_001798.1 + 154399 0.69 0.47174
Target:  5'- gGCGCgaaGgCGGGCgGCGGCgGCGGGcGGg -3'
miRNA:   3'- gCGCGa--CgGCCUG-CGCCG-UGUCCaCC- -5'
5117 5' -62 NC_001798.1 + 154070 0.73 0.306368
Target:  5'- aGCGC--CgGGGCGCGGCACGGcUGGa -3'
miRNA:   3'- gCGCGacGgCCUGCGCCGUGUCcACC- -5'
5117 5' -62 NC_001798.1 + 154044 0.81 0.092662
Target:  5'- aGCGC-GCCGGGgCGCGGCACGGcUGGa -3'
miRNA:   3'- gCGCGaCGGCCU-GCGCCGUGUCcACC- -5'
5117 5' -62 NC_001798.1 + 153775 0.68 0.545637
Target:  5'- gGCGCUG-CGGcccgcgcuccuuGCGCGGCggcgGCGGG-GGg -3'
miRNA:   3'- gCGCGACgGCC------------UGCGCCG----UGUCCaCC- -5'
5117 5' -62 NC_001798.1 + 153664 0.67 0.612145
Target:  5'- cCGCGCgGCgcguccgCGGGCGgGGaCGCGGG-GGc -3'
miRNA:   3'- -GCGCGaCG-------GCCUGCgCC-GUGUCCaCC- -5'
5117 5' -62 NC_001798.1 + 153022 0.67 0.621885
Target:  5'- gGCGgaGuCCGGGCccgcgcgGCGGCGCGcGGuUGGc -3'
miRNA:   3'- gCGCgaC-GGCCUG-------CGCCGUGU-CC-ACC- -5'
5117 5' -62 NC_001798.1 + 152644 0.69 0.489773
Target:  5'- gGCGCcccGCCGG-CGCGGCcCuGaGUGGu -3'
miRNA:   3'- gCGCGa--CGGCCuGCGCCGuGuC-CACC- -5'
5117 5' -62 NC_001798.1 + 151673 0.66 0.642354
Target:  5'- cCGUGCUGCCcgccucGGAgGUGGguCGcGGUGa -3'
miRNA:   3'- -GCGCGACGG------CCUgCGCCguGU-CCACc -5'
5117 5' -62 NC_001798.1 + 151604 0.67 0.603391
Target:  5'- gGCGCUcgGCCGGGgGCcgGGC-CGGG-GGc -3'
miRNA:   3'- gCGCGA--CGGCCUgCG--CCGuGUCCaCC- -5'
5117 5' -62 NC_001798.1 + 150849 0.69 0.517404
Target:  5'- gGCGCcgGUCGGGuCGCGGC--GGGcUGGg -3'
miRNA:   3'- gCGCGa-CGGCCU-GCGCCGugUCC-ACC- -5'
5117 5' -62 NC_001798.1 + 149649 0.72 0.334168
Target:  5'- aGCGCgugagGCCGGGCGCcgGGuCGCGGGccccGGg -3'
miRNA:   3'- gCGCGa----CGGCCUGCG--CC-GUGUCCa---CC- -5'
5117 5' -62 NC_001798.1 + 149251 0.66 0.681197
Target:  5'- gGCGUcGCCGG-C-CGGCGCGGGc-- -3'
miRNA:   3'- gCGCGaCGGCCuGcGCCGUGUCCacc -5'
5117 5' -62 NC_001798.1 + 148409 0.69 0.517404
Target:  5'- gCGgGCggGgUGGGCGCcggGGCGgGGGUGGg -3'
miRNA:   3'- -GCgCGa-CgGCCUGCG---CCGUgUCCACC- -5'
5117 5' -62 NC_001798.1 + 148377 0.66 0.681197
Target:  5'- gGUGaggaggGgCGGGCGUGGCggGCAGGUGu -3'
miRNA:   3'- gCGCga----CgGCCUGCGCCG--UGUCCACc -5'
5117 5' -62 NC_001798.1 + 148036 0.72 0.348745
Target:  5'- cCGCGUggGCgCGGGCGgGGgGguGGUGGu -3'
miRNA:   3'- -GCGCGa-CG-GCCUGCgCCgUguCCACC- -5'
5117 5' -62 NC_001798.1 + 145801 0.72 0.3414
Target:  5'- gCGCGCggGCggcagaaacgCGGGCGCGGCGgCggucgGGGUGGg -3'
miRNA:   3'- -GCGCGa-CG----------GCCUGCGCCGU-G-----UCCACC- -5'
5117 5' -62 NC_001798.1 + 144070 0.7 0.411467
Target:  5'- uGCGCcugGCCGGGaugGUGGUACGGGUc- -3'
miRNA:   3'- gCGCGa--CGGCCUg--CGCCGUGUCCAcc -5'
5117 5' -62 NC_001798.1 + 142129 1.09 0.000941
Target:  5'- gCGCGCUGCCGGACGCGGCACAGGUGGu -3'
miRNA:   3'- -GCGCGACGGCCUGCGCCGUGUCCACC- -5'
5117 5' -62 NC_001798.1 + 141470 0.67 0.603391
Target:  5'- aGCuGCUGaCCGGcuCGCcGCGCGGG-GGg -3'
miRNA:   3'- gCG-CGAC-GGCCu-GCGcCGUGUCCaCC- -5'
5117 5' -62 NC_001798.1 + 137454 0.69 0.480715
Target:  5'- aCGCGCUcGcCCGGAaauCGGCGgGGGUuGGg -3'
miRNA:   3'- -GCGCGA-C-GGCCUgc-GCCGUgUCCA-CC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.