miRNA display CGI


Results 21 - 40 of 175 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5117 5' -62 NC_001798.1 + 135950 0.68 0.545637
Target:  5'- gGCGCccUGCUGGACGCGGaGCAauacUGGa -3'
miRNA:   3'- gCGCG--ACGGCCUGCGCCgUGUcc--ACC- -5'
5117 5' -62 NC_001798.1 + 135232 0.71 0.403251
Target:  5'- cCGgGCUGCCGGAaGCccgGGgGCGGGcGGg -3'
miRNA:   3'- -GCgCGACGGCCUgCG---CCgUGUCCaCC- -5'
5117 5' -62 NC_001798.1 + 134446 0.66 0.671523
Target:  5'- gCGCGCgucGCCGaGcaccccggcGCGCGGUugGcGUGGg -3'
miRNA:   3'- -GCGCGa--CGGC-C---------UGCGCCGugUcCACC- -5'
5117 5' -62 NC_001798.1 + 132672 0.75 0.212901
Target:  5'- gGCGCUGCgacgcgucgcaCGccGACGCGGCGCAGGcgcgGGg -3'
miRNA:   3'- gCGCGACG-----------GC--CUGCGCCGUGUCCa---CC- -5'
5117 5' -62 NC_001798.1 + 132141 0.68 0.545637
Target:  5'- uGCGCcGCCGGGgGcCGGCggGCGGGg-- -3'
miRNA:   3'- gCGCGaCGGCCUgC-GCCG--UGUCCacc -5'
5117 5' -62 NC_001798.1 + 131349 0.66 0.652094
Target:  5'- gGCGCgacGUCGGcgcccgGCGCGGCcuCGGG-GGa -3'
miRNA:   3'- gCGCGa--CGGCC------UGCGCCGu-GUCCaCC- -5'
5117 5' -62 NC_001798.1 + 130519 0.74 0.268048
Target:  5'- cCGaCGaUGCCGGugGCGGCGauggccccgAGGUGGg -3'
miRNA:   3'- -GC-GCgACGGCCugCGCCGUg--------UCCACC- -5'
5117 5' -62 NC_001798.1 + 130300 0.67 0.583999
Target:  5'- aGCGCcgaaUGGGCGCGGUGcCGGGUGu -3'
miRNA:   3'- gCGCGacg-GCCUGCGCCGU-GUCCACc -5'
5117 5' -62 NC_001798.1 + 129014 0.68 0.523942
Target:  5'- cCGCGCcGCCGGcgaaaaaaggcgAUGCuccgccccggaucgGGCGCuGGUGGa -3'
miRNA:   3'- -GCGCGaCGGCC------------UGCG--------------CCGUGuCCACC- -5'
5117 5' -62 NC_001798.1 + 128240 0.74 0.268048
Target:  5'- uCGUGUcGCUGGAgGCGGCcgGCAuGGUGGa -3'
miRNA:   3'- -GCGCGaCGGCCUgCGCCG--UGU-CCACC- -5'
5117 5' -62 NC_001798.1 + 125655 0.67 0.603391
Target:  5'- gCGgGCgaGgCGGGgGCGGCugAGGUcaGGg -3'
miRNA:   3'- -GCgCGa-CgGCCUgCGCCGugUCCA--CC- -5'
5117 5' -62 NC_001798.1 + 125411 0.67 0.62286
Target:  5'- cCGCGCgacgGCCGaGAagaGCGGCgagugcucgcaGCAGucGUGGa -3'
miRNA:   3'- -GCGCGa---CGGC-CUg--CGCCG-----------UGUC--CACC- -5'
5117 5' -62 NC_001798.1 + 122204 0.66 0.661819
Target:  5'- cCGCGaucGCUGGucgaGUGGCuggaccGCGGGUGGg -3'
miRNA:   3'- -GCGCga-CGGCCug--CGCCG------UGUCCACC- -5'
5117 5' -62 NC_001798.1 + 122066 0.7 0.46285
Target:  5'- gGCGC-GUCGGACGCGGagGCGGuGcUGGc -3'
miRNA:   3'- gCGCGaCGGCCUGCGCCg-UGUC-C-ACC- -5'
5117 5' -62 NC_001798.1 + 121544 0.68 0.536167
Target:  5'- gGCGCUgcGCCuGGCGUGGgGCccGUGGg -3'
miRNA:   3'- gCGCGA--CGGcCUGCGCCgUGucCACC- -5'
5117 5' -62 NC_001798.1 + 120565 0.68 0.555161
Target:  5'- gGcCGCUGuuGGugGUGGUGgAGG-GGc -3'
miRNA:   3'- gC-GCGACggCCugCGCCGUgUCCaCC- -5'
5117 5' -62 NC_001798.1 + 118680 0.66 0.690835
Target:  5'- gGCGCU-CgCGGACGUGGCGCAc---- -3'
miRNA:   3'- gCGCGAcG-GCCUGCGCCGUGUccacc -5'
5117 5' -62 NC_001798.1 + 117678 0.69 0.49891
Target:  5'- aCGCGCgGCCGGcgGCGUGuaCGCGGG-GGa -3'
miRNA:   3'- -GCGCGaCGGCC--UGCGCc-GUGUCCaCC- -5'
5117 5' -62 NC_001798.1 + 117258 0.67 0.629683
Target:  5'- gCGCGC-GUCGGAgGCGuacuuucugggccaGCucCAGGUGGc -3'
miRNA:   3'- -GCGCGaCGGCCUgCGC--------------CGu-GUCCACC- -5'
5117 5' -62 NC_001798.1 + 114864 0.66 0.671523
Target:  5'- aCGCGCgggcgGCCGGucgACGgGGUGCuGGUc- -3'
miRNA:   3'- -GCGCGa----CGGCC---UGCgCCGUGuCCAcc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.