miRNA display CGI


Results 21 - 40 of 175 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5117 5' -62 NC_001798.1 + 9653 0.7 0.411467
Target:  5'- gGCGCagcggGCCGcGCGCggagGGCGCGGGaUGGg -3'
miRNA:   3'- gCGCGa----CGGCcUGCG----CCGUGUCC-ACC- -5'
5117 5' -62 NC_001798.1 + 12702 0.73 0.293146
Target:  5'- cCGgGUUGCUGGGgGCGGCGgGGGcgUGGu -3'
miRNA:   3'- -GCgCGACGGCCUgCGCCGUgUCC--ACC- -5'
5117 5' -62 NC_001798.1 + 12862 0.66 0.660847
Target:  5'- gGUGgUGUCGGACagcuccgGCGGCAgCAGGgugcUGGu -3'
miRNA:   3'- gCGCgACGGCCUG-------CGCCGU-GUCC----ACC- -5'
5117 5' -62 NC_001798.1 + 13040 0.68 0.536167
Target:  5'- -aCGCUGCCGGGgGgauGCGCAGG-GGg -3'
miRNA:   3'- gcGCGACGGCCUgCgc-CGUGUCCaCC- -5'
5117 5' -62 NC_001798.1 + 14344 0.74 0.268048
Target:  5'- uCGCGUuuguUGUauCGGACGCGGgGCcGGUGGg -3'
miRNA:   3'- -GCGCG----ACG--GCCUGCGCCgUGuCCACC- -5'
5117 5' -62 NC_001798.1 + 15271 0.68 0.564733
Target:  5'- gGCGgUGCCccggguuccGGGCGUGGCGguGGUcgcGGc -3'
miRNA:   3'- gCGCgACGG---------CCUGCGCCGUguCCA---CC- -5'
5117 5' -62 NC_001798.1 + 15563 0.73 0.2997
Target:  5'- gGCGUUGCCGccgcCGCGGCGgGGaGUGGc -3'
miRNA:   3'- gCGCGACGGCcu--GCGCCGUgUC-CACC- -5'
5117 5' -62 NC_001798.1 + 16218 0.69 0.489773
Target:  5'- aCGCGCcGCCuGugGgGGgGC-GGUGGg -3'
miRNA:   3'- -GCGCGaCGGcCugCgCCgUGuCCACC- -5'
5117 5' -62 NC_001798.1 + 17540 0.7 0.428205
Target:  5'- --aGCUGCCGGGagacCGCGGUuaucugUAGGUGGc -3'
miRNA:   3'- gcgCGACGGCCU----GCGCCGu-----GUCCACC- -5'
5117 5' -62 NC_001798.1 + 19742 0.7 0.411467
Target:  5'- cCGCGCUcaugGCCGGAgaaaugUGUGGCcGCAGGgauagGGg -3'
miRNA:   3'- -GCGCGA----CGGCCU------GCGCCG-UGUCCa----CC- -5'
5117 5' -62 NC_001798.1 + 19974 0.67 0.62286
Target:  5'- cCGCGauagccccGCCGGACGCGGauucCGGGUu- -3'
miRNA:   3'- -GCGCga------CGGCCUGCGCCgu--GUCCAcc -5'
5117 5' -62 NC_001798.1 + 20356 0.77 0.167792
Target:  5'- gGCGCUGCCGGGCggguucgggGCGGCacGCAGGa-- -3'
miRNA:   3'- gCGCGACGGCCUG---------CGCCG--UGUCCacc -5'
5117 5' -62 NC_001798.1 + 22877 0.7 0.419785
Target:  5'- cCGCGCgGCCcGGGuucggGUGGCAC-GGUGGg -3'
miRNA:   3'- -GCGCGaCGG-CCUg----CGCCGUGuCCACC- -5'
5117 5' -62 NC_001798.1 + 23659 0.73 0.280374
Target:  5'- aGCGCcGCCGGgcccGCGCGGCGguGGccGGc -3'
miRNA:   3'- gCGCGaCGGCC----UGCGCCGUguCCa-CC- -5'
5117 5' -62 NC_001798.1 + 23948 0.66 0.642354
Target:  5'- gGCGCcgaGCUGGgcgACGCGGCGCAGc--- -3'
miRNA:   3'- gCGCGa--CGGCC---UGCGCCGUGUCcacc -5'
5117 5' -62 NC_001798.1 + 23990 0.72 0.348745
Target:  5'- aCGCgGCUgcuguacacGCCGGACGCGGagGCgaugGGGUGGc -3'
miRNA:   3'- -GCG-CGA---------CGGCCUGCGCCg-UG----UCCACC- -5'
5117 5' -62 NC_001798.1 + 24041 0.69 0.47174
Target:  5'- cCGCGCguggcGCCcggGGACGUGGCGCuGGa-- -3'
miRNA:   3'- -GCGCGa----CGG---CCUGCGCCGUGuCCacc -5'
5117 5' -62 NC_001798.1 + 24282 0.66 0.652094
Target:  5'- aCGCGCcccUGCUGGcgcgcgagaACGCGGCGCugaccGG-GGc -3'
miRNA:   3'- -GCGCG---ACGGCC---------UGCGCCGUGu----CCaCC- -5'
5117 5' -62 NC_001798.1 + 24513 0.67 0.618962
Target:  5'- cCGCGCcgGCCGGggccgacgacgacgACGacgacgacggcgcCGGCGguGGUGGc -3'
miRNA:   3'- -GCGCGa-CGGCC--------------UGC-------------GCCGUguCCACC- -5'
5117 5' -62 NC_001798.1 + 25509 0.68 0.536167
Target:  5'- cCGCGCggcgGCCuGGAUGCG-C-CAGGUGc -3'
miRNA:   3'- -GCGCGa---CGG-CCUGCGCcGuGUCCACc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.