Results 1 - 20 of 35 are showing below:
Show page:
<< Previous Page | Next Page >>
ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
5118 | 5' | -54.4 | NC_001798.1 | + | 54658 | 0.66 | 0.94094 |
Target: 5'- -gCAGCgGCCGGCagccGCGGCGcgcccgcucgCGGCUCa -3' miRNA: 3'- uaGUUG-CGGCUGa---UGCCGUa---------GUCGAG- -5' |
|||||||
5118 | 5' | -54.4 | NC_001798.1 | + | 137975 | 0.66 | 0.94094 |
Target: 5'- -cCAGCGCCcccGCcuggGCGcGCcgCAGCUCg -3' miRNA: 3'- uaGUUGCGGc--UGa---UGC-CGuaGUCGAG- -5' |
|||||||
5118 | 5' | -54.4 | NC_001798.1 | + | 23944 | 0.66 | 0.940462 |
Target: 5'- uGUgGGCGCCGAgCUgggcgacGCGGCG-CAGCa- -3' miRNA: 3'- -UAgUUGCGGCU-GA-------UGCCGUaGUCGag -5' |
|||||||
5118 | 5' | -54.4 | NC_001798.1 | + | 149970 | 0.66 | 0.936052 |
Target: 5'- --aGACGCCGACgGgGGCG-CGGCg- -3' miRNA: 3'- uagUUGCGGCUGaUgCCGUaGUCGag -5' |
|||||||
5118 | 5' | -54.4 | NC_001798.1 | + | 89751 | 0.66 | 0.936052 |
Target: 5'- -aCGGCcUCGGCgACGGCGUuCAGCUUg -3' miRNA: 3'- uaGUUGcGGCUGaUGCCGUA-GUCGAG- -5' |
|||||||
5118 | 5' | -54.4 | NC_001798.1 | + | 128081 | 0.66 | 0.919888 |
Target: 5'- -cCGAC-CCGAUgugguCGGCGUCGGCg- -3' miRNA: 3'- uaGUUGcGGCUGau---GCCGUAGUCGag -5' |
|||||||
5118 | 5' | -54.4 | NC_001798.1 | + | 62333 | 0.66 | 0.919888 |
Target: 5'- ---uACGCUGACcGCGGCcccgGUCGGcCUCg -3' miRNA: 3'- uaguUGCGGCUGaUGCCG----UAGUC-GAG- -5' |
|||||||
5118 | 5' | -54.4 | NC_001798.1 | + | 131352 | 0.67 | 0.913999 |
Target: 5'- -gCGACGUCGGCgccCGGCG-CGGcCUCg -3' miRNA: 3'- uaGUUGCGGCUGau-GCCGUaGUC-GAG- -5' |
|||||||
5118 | 5' | -54.4 | NC_001798.1 | + | 46486 | 0.67 | 0.910346 |
Target: 5'- -aCGGCGCCaACUGCGGaAaccggugcagggagcUCGGCUCg -3' miRNA: 3'- uaGUUGCGGcUGAUGCCgU---------------AGUCGAG- -5' |
|||||||
5118 | 5' | -54.4 | NC_001798.1 | + | 23739 | 0.67 | 0.907861 |
Target: 5'- cUgGACGCCGAC-GCGGCcucCGGCg- -3' miRNA: 3'- uAgUUGCGGCUGaUGCCGua-GUCGag -5' |
|||||||
5118 | 5' | -54.4 | NC_001798.1 | + | 5442 | 0.67 | 0.907861 |
Target: 5'- cAUUAGCGcCCGGCgcggGCGGCuUCcGCUUc -3' miRNA: 3'- -UAGUUGC-GGCUGa---UGCCGuAGuCGAG- -5' |
|||||||
5118 | 5' | -54.4 | NC_001798.1 | + | 128489 | 0.67 | 0.907234 |
Target: 5'- -aCAACGCCaGcCUGCGGCuggacgcccagucGUCGGCg- -3' miRNA: 3'- uaGUUGCGG-CuGAUGCCG-------------UAGUCGag -5' |
|||||||
5118 | 5' | -54.4 | NC_001798.1 | + | 109091 | 0.67 | 0.901476 |
Target: 5'- ----cCGCCGACaACGGC-UCGGCg- -3' miRNA: 3'- uaguuGCGGCUGaUGCCGuAGUCGag -5' |
|||||||
5118 | 5' | -54.4 | NC_001798.1 | + | 78033 | 0.68 | 0.880868 |
Target: 5'- gGUCGACGCCGAgccccUGGCG-CGGCUg -3' miRNA: 3'- -UAGUUGCGGCUgau--GCCGUaGUCGAg -5' |
|||||||
5118 | 5' | -54.4 | NC_001798.1 | + | 4751 | 0.68 | 0.865962 |
Target: 5'- -cCGGgGCCGcCUcguCGGCAUCGGCaUCg -3' miRNA: 3'- uaGUUgCGGCuGAu--GCCGUAGUCG-AG- -5' |
|||||||
5118 | 5' | -54.4 | NC_001798.1 | + | 132684 | 0.68 | 0.858175 |
Target: 5'- cGUCGcACGCCGAC-GCGGCGcaGGCg- -3' miRNA: 3'- -UAGU-UGCGGCUGaUGCCGUagUCGag -5' |
|||||||
5118 | 5' | -54.4 | NC_001798.1 | + | 2766 | 0.68 | 0.841964 |
Target: 5'- -gCGGCGgCGGCgGCGGCGg-AGCUCa -3' miRNA: 3'- uaGUUGCgGCUGaUGCCGUagUCGAG- -5' |
|||||||
5118 | 5' | -54.4 | NC_001798.1 | + | 53099 | 0.69 | 0.833555 |
Target: 5'- -gCAACGCCgGGCgcGCGGCGcgAGCUCc -3' miRNA: 3'- uaGUUGCGG-CUGa-UGCCGUagUCGAG- -5' |
|||||||
5118 | 5' | -54.4 | NC_001798.1 | + | 111518 | 0.69 | 0.824953 |
Target: 5'- cGUCAAUcCCGACU-CGGCGUgGGgCUCc -3' miRNA: 3'- -UAGUUGcGGCUGAuGCCGUAgUC-GAG- -5' |
|||||||
5118 | 5' | -54.4 | NC_001798.1 | + | 76466 | 0.69 | 0.816168 |
Target: 5'- cAUCAACGaCCaGCaggcGCGGCG-CAGCUCg -3' miRNA: 3'- -UAGUUGC-GGcUGa---UGCCGUaGUCGAG- -5' |
<< Previous Page | Next Page >>
Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
Back To miRNA display CGI home