miRNA display CGI


Results 41 - 60 of 398 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5119 5' -61.9 NC_001798.1 + 77971 0.66 0.682979
Target:  5'- ---cACCGCCuCGGCUGgagcgcggcguUCCACGCCg -3'
miRNA:   3'- acucUGGUGGcGCCGGC-----------AGGUGCGGg -5'
5119 5' -61.9 NC_001798.1 + 135697 0.66 0.682979
Target:  5'- aGGGAuuuCCucuCCGCggGGCCGcgUACGCCCg -3'
miRNA:   3'- aCUCU---GGu--GGCG--CCGGCagGUGCGGG- -5'
5119 5' -61.9 NC_001798.1 + 59667 0.66 0.680084
Target:  5'- gGGGGCgACUcggcucgcguggggGCGGCgGg-CACGCCCg -3'
miRNA:   3'- aCUCUGgUGG--------------CGCCGgCagGUGCGGG- -5'
5119 5' -61.9 NC_001798.1 + 106987 0.66 0.673317
Target:  5'- gGAGGCgGCgGUGGUaaUGaCCAgCGCCCa -3'
miRNA:   3'- aCUCUGgUGgCGCCG--GCaGGU-GCGGG- -5'
5119 5' -61.9 NC_001798.1 + 98576 0.66 0.673317
Target:  5'- gGuGGCCGCgGUGG-CGUCgGCgGCCCn -3'
miRNA:   3'- aCuCUGGUGgCGCCgGCAGgUG-CGGG- -5'
5119 5' -61.9 NC_001798.1 + 77563 0.66 0.673317
Target:  5'- aGGGACgGCCGgGGaCCauUCCcccagcgggcGCGCCCu -3'
miRNA:   3'- aCUCUGgUGGCgCC-GGc-AGG----------UGCGGG- -5'
5119 5' -61.9 NC_001798.1 + 25692 0.66 0.673317
Target:  5'- cGGGcCCGCCaCGGCCG-CCugGgCg -3'
miRNA:   3'- aCUCuGGUGGcGCCGGCaGGugCgGg -5'
5119 5' -61.9 NC_001798.1 + 1719 0.66 0.673317
Target:  5'- gGAGGCCAgCacgguGCGGCgcagGUCCcGCGCCg -3'
miRNA:   3'- aCUCUGGUgG-----CGCCGg---CAGG-UGCGGg -5'
5119 5' -61.9 NC_001798.1 + 28785 0.66 0.673317
Target:  5'- gGAGGCgGCgGCGGCgGcgcgcggguccUCCGcCGCCg -3'
miRNA:   3'- aCUCUGgUGgCGCCGgC-----------AGGU-GCGGg -5'
5119 5' -61.9 NC_001798.1 + 52940 0.66 0.673317
Target:  5'- gGAGACCGCCGCccuCCGggCgCACGUguCCg -3'
miRNA:   3'- aCUCUGGUGGCGcc-GGCa-G-GUGCG--GG- -5'
5119 5' -61.9 NC_001798.1 + 87747 0.66 0.673317
Target:  5'- cGA-ACC-CCGCGGCCcugagCCGCGCggCCa -3'
miRNA:   3'- aCUcUGGuGGCGCCGGca---GGUGCG--GG- -5'
5119 5' -61.9 NC_001798.1 + 35201 0.66 0.673317
Target:  5'- -cGGGCCcCUGCGuucguuGCUG-CCGCGCCCc -3'
miRNA:   3'- acUCUGGuGGCGC------CGGCaGGUGCGGG- -5'
5119 5' -61.9 NC_001798.1 + 140190 0.66 0.673317
Target:  5'- -cGGGCCGCCuGCGGCCgGUgCugGUg- -3'
miRNA:   3'- acUCUGGUGG-CGCCGG-CAgGugCGgg -5'
5119 5' -61.9 NC_001798.1 + 132553 0.66 0.673317
Target:  5'- cGGGGCgCGCU-CGGagcCCGUCUuuACGCCCa -3'
miRNA:   3'- aCUCUG-GUGGcGCC---GGCAGG--UGCGGG- -5'
5119 5' -61.9 NC_001798.1 + 120217 0.66 0.673317
Target:  5'- -cGGGCC-CCG-GGCCGUUgGCcCCCg -3'
miRNA:   3'- acUCUGGuGGCgCCGGCAGgUGcGGG- -5'
5119 5' -61.9 NC_001798.1 + 118887 0.66 0.673317
Target:  5'- gGGGAUC-CCGuCaGCCucGUCC-CGCCCg -3'
miRNA:   3'- aCUCUGGuGGC-GcCGG--CAGGuGCGGG- -5'
5119 5' -61.9 NC_001798.1 + 100656 0.66 0.667505
Target:  5'- --cGACCugCGCuuuGCCGacaucgacacggucaUCCGCGCCg -3'
miRNA:   3'- acuCUGGugGCGc--CGGC---------------AGGUGCGGg -5'
5119 5' -61.9 NC_001798.1 + 121878 0.66 0.663625
Target:  5'- --cGGCCACCGCGGaggaCGUguccaUCACGCa- -3'
miRNA:   3'- acuCUGGUGGCGCCg---GCA-----GGUGCGgg -5'
5119 5' -61.9 NC_001798.1 + 25430 0.66 0.663625
Target:  5'- --uGGCCGCgCGCuGcGCCGcCC-CGCCCc -3'
miRNA:   3'- acuCUGGUG-GCG-C-CGGCaGGuGCGGG- -5'
5119 5' -61.9 NC_001798.1 + 109723 0.66 0.663625
Target:  5'- cGGGAacgcgcCCGCCGgGGCCuccucauaaCCACgGCCCu -3'
miRNA:   3'- aCUCU------GGUGGCgCCGGca-------GGUG-CGGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.