miRNA display CGI


Results 21 - 40 of 398 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5119 5' -61.9 NC_001798.1 + 56236 0.66 0.692603
Target:  5'- aGaAGACaACCgGCGGCCGggcCCG-GCCCc -3'
miRNA:   3'- aC-UCUGgUGG-CGCCGGCa--GGUgCGGG- -5'
5119 5' -61.9 NC_001798.1 + 154016 0.66 0.692603
Target:  5'- aGGGACCAuuugggaguCUGCGGuuGggagCGCGCCg -3'
miRNA:   3'- aCUCUGGU---------GGCGCCggCag--GUGCGGg -5'
5119 5' -61.9 NC_001798.1 + 28648 0.66 0.692603
Target:  5'- -cGGGCCgACCGCGaCCGguUCCgGCGCCg -3'
miRNA:   3'- acUCUGG-UGGCGCcGGC--AGG-UGCGGg -5'
5119 5' -61.9 NC_001798.1 + 32562 0.66 0.692603
Target:  5'- -cGGACCugcugcggGCCGCGGCCc-CCGCGUggagCCg -3'
miRNA:   3'- acUCUGG--------UGGCGCCGGcaGGUGCG----GG- -5'
5119 5' -61.9 NC_001798.1 + 68100 0.66 0.692603
Target:  5'- uUGAGACggaCGCaCGgGGCCG-CgCACGgCCa -3'
miRNA:   3'- -ACUCUG---GUG-GCgCCGGCaG-GUGCgGG- -5'
5119 5' -61.9 NC_001798.1 + 123716 0.66 0.692603
Target:  5'- cGAGcgccGCUACUGCGccaCCGUCCACcUCCg -3'
miRNA:   3'- aCUC----UGGUGGCGCc--GGCAGGUGcGGG- -5'
5119 5' -61.9 NC_001798.1 + 127742 0.66 0.692603
Target:  5'- aUGcGGCCGCCGCaacacCCGgcgCCaaGCGCCCc -3'
miRNA:   3'- -ACuCUGGUGGCGcc---GGCa--GG--UGCGGG- -5'
5119 5' -61.9 NC_001798.1 + 39914 0.66 0.692603
Target:  5'- uUGGGAaCGCCGCgucgauGGCC-UCCGC-CCCu -3'
miRNA:   3'- -ACUCUgGUGGCG------CCGGcAGGUGcGGG- -5'
5119 5' -61.9 NC_001798.1 + 58018 0.66 0.692603
Target:  5'- --cGACCGCCgGCucGCCGccaUCCGCGgCCg -3'
miRNA:   3'- acuCUGGUGG-CGc-CGGC---AGGUGCgGG- -5'
5119 5' -61.9 NC_001798.1 + 151856 0.66 0.692603
Target:  5'- cGGGACCcCCGC-GCCGUgucccCCGUGUCCc -3'
miRNA:   3'- aCUCUGGuGGCGcCGGCA-----GGUGCGGG- -5'
5119 5' -61.9 NC_001798.1 + 150377 0.66 0.692603
Target:  5'- -cGGGCgGCgCGggccCGGCCGcgUCCGCGCUCg -3'
miRNA:   3'- acUCUGgUG-GC----GCCGGC--AGGUGCGGG- -5'
5119 5' -61.9 NC_001798.1 + 70050 0.66 0.682979
Target:  5'- -uGGGC--CCGCGGUC-UCCGCGCCg -3'
miRNA:   3'- acUCUGguGGCGCCGGcAGGUGCGGg -5'
5119 5' -61.9 NC_001798.1 + 72460 0.66 0.682979
Target:  5'- cGGGcACCgccuguacGCCGUGGUCG-CagACGCCCa -3'
miRNA:   3'- aCUC-UGG--------UGGCGCCGGCaGg-UGCGGG- -5'
5119 5' -61.9 NC_001798.1 + 116312 0.66 0.682979
Target:  5'- cGAGACUGCCggauugacGCGGgggggcacgagcCCGUCUACGCg- -3'
miRNA:   3'- aCUCUGGUGG--------CGCC------------GGCAGGUGCGgg -5'
5119 5' -61.9 NC_001798.1 + 135495 0.66 0.682979
Target:  5'- gGGGACgcggaCGCCGCgcacGGCgCGaUCCaggACGCCCg -3'
miRNA:   3'- aCUCUG-----GUGGCG----CCG-GC-AGG---UGCGGG- -5'
5119 5' -61.9 NC_001798.1 + 137989 0.66 0.682979
Target:  5'- -uGGGCgCGCCGCaGCUcgcgGUCgCGCGCCUg -3'
miRNA:   3'- acUCUG-GUGGCGcCGG----CAG-GUGCGGG- -5'
5119 5' -61.9 NC_001798.1 + 153968 0.66 0.682979
Target:  5'- cGAGGa---CGCGGCCGg-CGCGCUCu -3'
miRNA:   3'- aCUCUggugGCGCCGGCagGUGCGGG- -5'
5119 5' -61.9 NC_001798.1 + 1980 0.66 0.682979
Target:  5'- cGAGACguCgGgGGCgCgGUCCAguUGCCCg -3'
miRNA:   3'- aCUCUGguGgCgCCG-G-CAGGU--GCGGG- -5'
5119 5' -61.9 NC_001798.1 + 77971 0.66 0.682979
Target:  5'- ---cACCGCCuCGGCUGgagcgcggcguUCCACGCCg -3'
miRNA:   3'- acucUGGUGGcGCCGGC-----------AGGUGCGGg -5'
5119 5' -61.9 NC_001798.1 + 23681 0.66 0.682979
Target:  5'- gGuGGCCgGCCGCgacgccacgGGCCGcUUCACGgCCg -3'
miRNA:   3'- aCuCUGG-UGGCG---------CCGGC-AGGUGCgGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.