miRNA display CGI


Results 21 - 40 of 398 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5119 5' -61.9 NC_001798.1 + 3375 0.66 0.702181
Target:  5'- cGucGCCGCCGUcGUCGggggUUCGCGCCCc -3'
miRNA:   3'- aCucUGGUGGCGcCGGC----AGGUGCGGG- -5'
5119 5' -61.9 NC_001798.1 + 3504 0.76 0.190196
Target:  5'- --uGGCCACgGCGGCCG-CCACGUgCg -3'
miRNA:   3'- acuCUGGUGgCGCCGGCaGGUGCGgG- -5'
5119 5' -61.9 NC_001798.1 + 3607 0.66 0.663625
Target:  5'- gGAG-CUGCUGuuGCgCG-CCGCGCCCg -3'
miRNA:   3'- aCUCuGGUGGCgcCG-GCaGGUGCGGG- -5'
5119 5' -61.9 NC_001798.1 + 3846 0.72 0.350298
Target:  5'- aGAGGCCGggGCGGCUGUCgCccaGCCCg -3'
miRNA:   3'- aCUCUGGUggCGCCGGCAG-Gug-CGGG- -5'
5119 5' -61.9 NC_001798.1 + 3997 0.75 0.214024
Target:  5'- cGGGGCCGCC-CGGCCGUgaaGCgGCCCg -3'
miRNA:   3'- aCUCUGGUGGcGCCGGCAgg-UG-CGGG- -5'
5119 5' -61.9 NC_001798.1 + 4157 0.7 0.438457
Target:  5'- cGGGcACCcCCGCcuccucGUCGUCCGCGCCg -3'
miRNA:   3'- aCUC-UGGuGGCGc-----CGGCAGGUGCGGg -5'
5119 5' -61.9 NC_001798.1 + 4677 0.71 0.380077
Target:  5'- cGAGGCCagcagggccagcuGCCGCGGCgagacgacgcCGUCCGCGgCa -3'
miRNA:   3'- aCUCUGG-------------UGGCGCCG----------GCAGGUGCgGg -5'
5119 5' -61.9 NC_001798.1 + 4907 0.73 0.311873
Target:  5'- cGGGGCCgccggucgucuccGCCGCGGCCcggagacgucccccGUCCuCGUCCg -3'
miRNA:   3'- aCUCUGG-------------UGGCGCCGG--------------CAGGuGCGGG- -5'
5119 5' -61.9 NC_001798.1 + 4973 0.67 0.624698
Target:  5'- --cGGCC-CCGCGGCCcUgCGCGUCg -3'
miRNA:   3'- acuCUGGuGGCGCCGGcAgGUGCGGg -5'
5119 5' -61.9 NC_001798.1 + 5299 0.68 0.585849
Target:  5'- cGAcGCCGCCGCGccccggcucGCCGggguUCCGCcCCCa -3'
miRNA:   3'- aCUcUGGUGGCGC---------CGGC----AGGUGcGGG- -5'
5119 5' -61.9 NC_001798.1 + 7908 0.68 0.538006
Target:  5'- ---uAUCGCCGCGGCUGcgCCcuGCGUCCa -3'
miRNA:   3'- acucUGGUGGCGCCGGCa-GG--UGCGGG- -5'
5119 5' -61.9 NC_001798.1 + 8680 0.73 0.30112
Target:  5'- --cGACgCACCGCGugcgccGCCGUCgGCGCCUu -3'
miRNA:   3'- acuCUG-GUGGCGC------CGGCAGgUGCGGG- -5'
5119 5' -61.9 NC_001798.1 + 9120 0.66 0.682979
Target:  5'- gGGGAgCCGCCGCgaGGUgGUCUGCGgCa -3'
miRNA:   3'- aCUCU-GGUGGCG--CCGgCAGGUGCgGg -5'
5119 5' -61.9 NC_001798.1 + 9567 0.66 0.663625
Target:  5'- gGAGcGCCugCGCcagcaGGUCaUgCACGCCCa -3'
miRNA:   3'- aCUC-UGGugGCG-----CCGGcAgGUGCGGG- -5'
5119 5' -61.9 NC_001798.1 + 11934 0.68 0.528588
Target:  5'- cGAacCCGCagaaGCGGCUG-CCGCGCCa -3'
miRNA:   3'- aCUcuGGUGg---CGCCGGCaGGUGCGGg -5'
5119 5' -61.9 NC_001798.1 + 12240 0.7 0.453182
Target:  5'- cUGAGACCagacugaccgugggGCCGCGGaCGaCCAgGCCg -3'
miRNA:   3'- -ACUCUGG--------------UGGCGCCgGCaGGUgCGGg -5'
5119 5' -61.9 NC_001798.1 + 13658 0.74 0.271805
Target:  5'- gGAGucCCACCGCGacaacuagcagggccGCCGUCCcgACGCCg -3'
miRNA:   3'- aCUCu-GGUGGCGC---------------CGGCAGG--UGCGGg -5'
5119 5' -61.9 NC_001798.1 + 15108 0.66 0.699313
Target:  5'- cGAGGCCGguggcgcugUCGuCGuccucgggggguucGCCGUCCccgGCGCCCu -3'
miRNA:   3'- aCUCUGGU---------GGC-GC--------------CGGCAGG---UGCGGG- -5'
5119 5' -61.9 NC_001798.1 + 16233 0.7 0.455808
Target:  5'- gGGGGCggugggGCCGgGGCCcUCCcCGCCCa -3'
miRNA:   3'- aCUCUGg-----UGGCgCCGGcAGGuGCGGG- -5'
5119 5' -61.9 NC_001798.1 + 16625 0.68 0.538006
Target:  5'- gGAcGACgCGCCGgGGCagGUCUugcCGCCCg -3'
miRNA:   3'- aCU-CUG-GUGGCgCCGg-CAGGu--GCGGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.