miRNA display CGI


Results 21 - 40 of 398 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5119 5' -61.9 NC_001798.1 + 107431 0.75 0.214024
Target:  5'- gGGGGUCGCCGCGGCgaccCCGCGCCCc -3'
miRNA:   3'- aCUCUGGUGGCGCCGgca-GGUGCGGG- -5'
5119 5' -61.9 NC_001798.1 + 105409 0.75 0.219088
Target:  5'- -aGGGCCGCCGCGGCCGcggugcgCUggGCCUg -3'
miRNA:   3'- acUCUGGUGGCGCCGGCa------GGugCGGG- -5'
5119 5' -61.9 NC_001798.1 + 2100 0.75 0.219599
Target:  5'- gGGGGCCcgcccccggcgcggcCCGCGGCCagGUCCuCGCCCg -3'
miRNA:   3'- aCUCUGGu--------------GGCGCCGG--CAGGuGCGGG- -5'
5119 5' -61.9 NC_001798.1 + 31915 0.75 0.224253
Target:  5'- -cGGGCC-CCGCGGCCucGUCCuCGCCUc -3'
miRNA:   3'- acUCUGGuGGCGCCGG--CAGGuGCGGG- -5'
5119 5' -61.9 NC_001798.1 + 462 0.75 0.234893
Target:  5'- cGcGGCCGCCucccccGCGGCCGccucccCCGCGCCCc -3'
miRNA:   3'- aCuCUGGUGG------CGCCGGCa-----GGUGCGGG- -5'
5119 5' -61.9 NC_001798.1 + 150672 0.75 0.234893
Target:  5'- ---cGCCGCCGCGG-CGUCUuCGCCCa -3'
miRNA:   3'- acucUGGUGGCGCCgGCAGGuGCGGG- -5'
5119 5' -61.9 NC_001798.1 + 30764 0.75 0.234893
Target:  5'- gGAGGCCGagGCGGCCGUgCGgGCCg -3'
miRNA:   3'- aCUCUGGUggCGCCGGCAgGUgCGGg -5'
5119 5' -61.9 NC_001798.1 + 146643 0.75 0.24037
Target:  5'- cGGGcAUC-CgGCGGCCGgccCCACGCCCu -3'
miRNA:   3'- aCUC-UGGuGgCGCCGGCa--GGUGCGGG- -5'
5119 5' -61.9 NC_001798.1 + 97214 0.74 0.245954
Target:  5'- gGAGACCGCCGCgguGGCCGUggagcUgGCGCUg -3'
miRNA:   3'- aCUCUGGUGGCG---CCGGCA-----GgUGCGGg -5'
5119 5' -61.9 NC_001798.1 + 39550 0.74 0.251644
Target:  5'- gUGGGuGgCGCCGgGGCCGUCCguccGCGCCg -3'
miRNA:   3'- -ACUC-UgGUGGCgCCGGCAGG----UGCGGg -5'
5119 5' -61.9 NC_001798.1 + 145464 0.74 0.26335
Target:  5'- --cGGCCGCCGCgcgcccccgcccGGCCGcCgCGCGCCCc -3'
miRNA:   3'- acuCUGGUGGCG------------CCGGCaG-GUGCGGG- -5'
5119 5' -61.9 NC_001798.1 + 145506 0.74 0.26335
Target:  5'- --cGGCCGCCGCgcgcccccgcccGGCCGcCgCGCGCCCc -3'
miRNA:   3'- acuCUGGUGGCG------------CCGGCaG-GUGCGGG- -5'
5119 5' -61.9 NC_001798.1 + 153361 0.74 0.26335
Target:  5'- cGAuGACCGCCuCGGCCGccgCCACGCg- -3'
miRNA:   3'- aCU-CUGGUGGcGCCGGCa--GGUGCGgg -5'
5119 5' -61.9 NC_001798.1 + 26301 0.74 0.26335
Target:  5'- cUGGGcgcGCCGCUGCGGcCCGUCUACGUg- -3'
miRNA:   3'- -ACUC---UGGUGGCGCC-GGCAGGUGCGgg -5'
5119 5' -61.9 NC_001798.1 + 145422 0.74 0.26335
Target:  5'- --cGGCCGCCGCgcgcccccgcccGGCCGcCgCGCGCCCc -3'
miRNA:   3'- acuCUGGUGGCG------------CCGGCaG-GUGCGGG- -5'
5119 5' -61.9 NC_001798.1 + 13658 0.74 0.271805
Target:  5'- gGAGucCCACCGCGacaacuagcagggccGCCGUCCcgACGCCg -3'
miRNA:   3'- aCUCu-GGUGGCGC---------------CGGCAGG--UGCGGg -5'
5119 5' -61.9 NC_001798.1 + 134409 0.74 0.273645
Target:  5'- gGAGGCCAaggucgacgucgacCCGCuGGCCcuGUCCGCGCgCg -3'
miRNA:   3'- aCUCUGGU--------------GGCG-CCGG--CAGGUGCGgG- -5'
5119 5' -61.9 NC_001798.1 + 151219 0.74 0.275495
Target:  5'- aGGGAgCGCgG-GGCCGUCCGCggguuGCCCg -3'
miRNA:   3'- aCUCUgGUGgCgCCGGCAGGUG-----CGGG- -5'
5119 5' -61.9 NC_001798.1 + 147238 0.74 0.275495
Target:  5'- gGGGGCC-CCGgGGCCccgggCCGCGCCg -3'
miRNA:   3'- aCUCUGGuGGCgCCGGca---GGUGCGGg -5'
5119 5' -61.9 NC_001798.1 + 111026 0.74 0.275495
Target:  5'- -cAGGCguCCGUGGCCGgcguacaaCACGCCCa -3'
miRNA:   3'- acUCUGguGGCGCCGGCag------GUGCGGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.