miRNA display CGI


Results 1 - 20 of 398 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5119 5' -61.9 NC_001798.1 + 141320 1.11 0.000692
Target:  5'- cUGAGACCACCGCGGCCGUCCACGCCCa -3'
miRNA:   3'- -ACUCUGGUGGCGCCGGCAGGUGCGGG- -5'
5119 5' -61.9 NC_001798.1 + 25193 0.87 0.037026
Target:  5'- cGccGCCGCCGCGGCCG-CCGCGCCCc -3'
miRNA:   3'- aCucUGGUGGCGCCGGCaGGUGCGGG- -5'
5119 5' -61.9 NC_001798.1 + 134163 0.86 0.042156
Target:  5'- cGGGGCCGUCGCGGCCGcCCGCGCCg -3'
miRNA:   3'- aCUCUGGUGGCGCCGGCaGGUGCGGg -5'
5119 5' -61.9 NC_001798.1 + 24853 0.84 0.053194
Target:  5'- cGAGGCCGCCGUGGCCG-CCguGCGCgCCg -3'
miRNA:   3'- aCUCUGGUGGCGCCGGCaGG--UGCG-GG- -5'
5119 5' -61.9 NC_001798.1 + 39415 0.83 0.063676
Target:  5'- cGGGACCGgggCGCGGCCGUCCGCGUgCg -3'
miRNA:   3'- aCUCUGGUg--GCGCCGGCAGGUGCGgG- -5'
5119 5' -61.9 NC_001798.1 + 26549 0.83 0.068756
Target:  5'- gGGGACCGCCGCggGGCUGgCCACGCCg -3'
miRNA:   3'- aCUCUGGUGGCG--CCGGCaGGUGCGGg -5'
5119 5' -61.9 NC_001798.1 + 59815 0.82 0.076917
Target:  5'- cGAGGCCuucuucuucuggggcGCCGCGGUCGcCCGCGUCCg -3'
miRNA:   3'- aCUCUGG---------------UGGCGCCGGCaGGUGCGGG- -5'
5119 5' -61.9 NC_001798.1 + 82068 0.8 0.100551
Target:  5'- cGGGGCC-CCGCGGCCGgcCCAC-CCCg -3'
miRNA:   3'- aCUCUGGuGGCGCCGGCa-GGUGcGGG- -5'
5119 5' -61.9 NC_001798.1 + 53627 0.8 0.113944
Target:  5'- cGGGGCCGCCGCGGCCaagUACGCCg -3'
miRNA:   3'- aCUCUGGUGGCGCCGGcagGUGCGGg -5'
5119 5' -61.9 NC_001798.1 + 25002 0.78 0.135508
Target:  5'- cGAcACCgucGCCGCGGCCGacucgcucgCCGCGCCCg -3'
miRNA:   3'- aCUcUGG---UGGCGCCGGCa--------GGUGCGGG- -5'
5119 5' -61.9 NC_001798.1 + 130701 0.78 0.156916
Target:  5'- cGAGACCGCggcgGCGGCCGUgCACaggaggguGCCCa -3'
miRNA:   3'- aCUCUGGUGg---CGCCGGCAgGUG--------CGGG- -5'
5119 5' -61.9 NC_001798.1 + 1509 0.77 0.172843
Target:  5'- cGAGGCgGCgGCccGGCCGUCCAgCGCCg -3'
miRNA:   3'- aCUCUGgUGgCG--CCGGCAGGU-GCGGg -5'
5119 5' -61.9 NC_001798.1 + 54844 0.77 0.174512
Target:  5'- cGAcACCACCGCcgccgccgccuggccGGCCGaaagCCACGCCCc -3'
miRNA:   3'- aCUcUGGUGGCG---------------CCGGCa---GGUGCGGG- -5'
5119 5' -61.9 NC_001798.1 + 29982 0.76 0.190196
Target:  5'- gGGGACCcCCGUgGGCCGUgCGcCGCCCc -3'
miRNA:   3'- aCUCUGGuGGCG-CCGGCAgGU-GCGGG- -5'
5119 5' -61.9 NC_001798.1 + 3504 0.76 0.190196
Target:  5'- --uGGCCACgGCGGCCG-CCACGUgCg -3'
miRNA:   3'- acuCUGGUGgCGCCGGCaGGUGCGgG- -5'
5119 5' -61.9 NC_001798.1 + 105285 0.76 0.194768
Target:  5'- cGcGGCCGCCGCGGUC-UCCAgCGCCUc -3'
miRNA:   3'- aCuCUGGUGGCGCCGGcAGGU-GCGGG- -5'
5119 5' -61.9 NC_001798.1 + 76043 0.75 0.213524
Target:  5'- cGAGGCCAUccaggCGCGGCUGgaggacgugcggaUCCAgGCCCg -3'
miRNA:   3'- aCUCUGGUG-----GCGCCGGC-------------AGGUgCGGG- -5'
5119 5' -61.9 NC_001798.1 + 107431 0.75 0.214024
Target:  5'- gGGGGUCGCCGCGGCgaccCCGCGCCCc -3'
miRNA:   3'- aCUCUGGUGGCGCCGgca-GGUGCGGG- -5'
5119 5' -61.9 NC_001798.1 + 35439 0.75 0.214024
Target:  5'- gGAGGCgugggccgcuggCGCCGCGGcCCGUCugCugGCCCg -3'
miRNA:   3'- aCUCUG------------GUGGCGCC-GGCAG--GugCGGG- -5'
5119 5' -61.9 NC_001798.1 + 48350 0.75 0.214024
Target:  5'- cGAcGCgACCGCGGCCGcCCGgggcCGCCCc -3'
miRNA:   3'- aCUcUGgUGGCGCCGGCaGGU----GCGGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.