miRNA display CGI


Results 1 - 20 of 398 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5119 5' -61.9 NC_001798.1 + 197 0.66 0.702181
Target:  5'- cGGGcGCCcCCgcGCGGCUuuuuucCCGCGCCCg -3'
miRNA:   3'- aCUC-UGGuGG--CGCCGGca----GGUGCGGG- -5'
5119 5' -61.9 NC_001798.1 + 462 0.75 0.234893
Target:  5'- cGcGGCCGCCucccccGCGGCCGccucccCCGCGCCCc -3'
miRNA:   3'- aCuCUGGUGG------CGCCGGCa-----GGUGCGGG- -5'
5119 5' -61.9 NC_001798.1 + 1152 0.72 0.357773
Target:  5'- cGuGGCCAgccCCGCGGCgGUCCccaccaccuccACGCCg -3'
miRNA:   3'- aCuCUGGU---GGCGCCGgCAGG-----------UGCGGg -5'
5119 5' -61.9 NC_001798.1 + 1193 0.69 0.509942
Target:  5'- --cGcCCGCCGCGGCCagcaccGUCCccgcGCgGCCCg -3'
miRNA:   3'- acuCuGGUGGCGCCGG------CAGG----UG-CGGG- -5'
5119 5' -61.9 NC_001798.1 + 1362 0.71 0.373056
Target:  5'- -cGGGCCGCCGC-GCaCGgcgUCGCGCCCc -3'
miRNA:   3'- acUCUGGUGGCGcCG-GCa--GGUGCGGG- -5'
5119 5' -61.9 NC_001798.1 + 1403 0.73 0.314607
Target:  5'- -cGGGCCGCaGCGGCgCGcCCAgGCCCc -3'
miRNA:   3'- acUCUGGUGgCGCCG-GCaGGUgCGGG- -5'
5119 5' -61.9 NC_001798.1 + 1509 0.77 0.172843
Target:  5'- cGAGGCgGCgGCccGGCCGUCCAgCGCCg -3'
miRNA:   3'- aCUCUGgUGgCG--CCGGCAGGU-GCGGg -5'
5119 5' -61.9 NC_001798.1 + 1662 0.68 0.585849
Target:  5'- -cAGGCgCGCgugCGCGGCC-UCCACGCgCg -3'
miRNA:   3'- acUCUG-GUG---GCGCCGGcAGGUGCGgG- -5'
5119 5' -61.9 NC_001798.1 + 1719 0.66 0.673317
Target:  5'- gGAGGCCAgCacgguGCGGCgcagGUCCcGCGCCg -3'
miRNA:   3'- aCUCUGGUgG-----CGCCGg---CAGG-UGCGGg -5'
5119 5' -61.9 NC_001798.1 + 1818 0.69 0.509942
Target:  5'- cGAGACCAcgggcCCGUcggcgGGCCaGUCCGCGgCg -3'
miRNA:   3'- aCUCUGGU-----GGCG-----CCGG-CAGGUGCgGg -5'
5119 5' -61.9 NC_001798.1 + 1980 0.66 0.682979
Target:  5'- cGAGACguCgGgGGCgCgGUCCAguUGCCCg -3'
miRNA:   3'- aCUCUGguGgCgCCG-G-CAGGU--GCGGG- -5'
5119 5' -61.9 NC_001798.1 + 2100 0.75 0.219599
Target:  5'- gGGGGCCcgcccccggcgcggcCCGCGGCCagGUCCuCGCCCg -3'
miRNA:   3'- aCUCUGGu--------------GGCGCCGG--CAGGuGCGGG- -5'
5119 5' -61.9 NC_001798.1 + 2434 0.67 0.614962
Target:  5'- -uGGGCC-CCgGCGGCUGgcggcgCCAgcCGCCCu -3'
miRNA:   3'- acUCUGGuGG-CGCCGGCa-----GGU--GCGGG- -5'
5119 5' -61.9 NC_001798.1 + 2564 0.72 0.36536
Target:  5'- aGGGGCgGCCGCGGggcggggggCGUCCGCGCg- -3'
miRNA:   3'- aCUCUGgUGGCGCCg--------GCAGGUGCGgg -5'
5119 5' -61.9 NC_001798.1 + 2798 0.67 0.634439
Target:  5'- -cGGGCU-CCGCGGCagcgCCGgGCCCa -3'
miRNA:   3'- acUCUGGuGGCGCCGgca-GGUgCGGG- -5'
5119 5' -61.9 NC_001798.1 + 2854 0.68 0.54179
Target:  5'- cGGcGGCCACgGCGGCCucgcugccgccggCCACGCgCa -3'
miRNA:   3'- aCU-CUGGUGgCGCCGGca-----------GGUGCGgG- -5'
5119 5' -61.9 NC_001798.1 + 3123 0.71 0.413157
Target:  5'- --cGGCCA-CGCGGCCcgccUCCGCGCgCCg -3'
miRNA:   3'- acuCUGGUgGCGCCGGc---AGGUGCG-GG- -5'
5119 5' -61.9 NC_001798.1 + 3211 0.67 0.634439
Target:  5'- gGAGGCgGgCGCGGCgcUCagGCGCCCc -3'
miRNA:   3'- aCUCUGgUgGCGCCGgcAGg-UGCGGG- -5'
5119 5' -61.9 NC_001798.1 + 3273 0.66 0.702181
Target:  5'- cGGGcACCGCgCGCucgucGGCCGgCgACGCCg -3'
miRNA:   3'- aCUC-UGGUG-GCG-----CCGGCaGgUGCGGg -5'
5119 5' -61.9 NC_001798.1 + 3336 0.67 0.605237
Target:  5'- -cGGGCUucCCGCGGgCGUCguCGCCg -3'
miRNA:   3'- acUCUGGu-GGCGCCgGCAGguGCGGg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.