miRNA display CGI


Results 1 - 20 of 398 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5119 5' -61.9 NC_001798.1 + 154535 0.66 0.702181
Target:  5'- cGGGcGCCcCCgcGCGGCUuuuuucCCGCGCCCg -3'
miRNA:   3'- aCUC-UGGuGG--CGCCGGca----GGUGCGGG- -5'
5119 5' -61.9 NC_001798.1 + 154016 0.66 0.692603
Target:  5'- aGGGACCAuuugggaguCUGCGGuuGggagCGCGCCg -3'
miRNA:   3'- aCUCUGGU---------GGCGCCggCag--GUGCGGg -5'
5119 5' -61.9 NC_001798.1 + 153968 0.66 0.682979
Target:  5'- cGAGGa---CGCGGCCGg-CGCGCUCu -3'
miRNA:   3'- aCUCUggugGCGCCGGCagGUGCGGG- -5'
5119 5' -61.9 NC_001798.1 + 153771 0.68 0.585849
Target:  5'- aGGGGgCGCUGCGGC---CCGCGCUCc -3'
miRNA:   3'- aCUCUgGUGGCGCCGgcaGGUGCGGG- -5'
5119 5' -61.9 NC_001798.1 + 153693 0.67 0.634439
Target:  5'- gGGGGCCGCCGcCGGCgcaGgcucaggCGCGCCa -3'
miRNA:   3'- aCUCUGGUGGC-GCCGg--Cag-----GUGCGGg -5'
5119 5' -61.9 NC_001798.1 + 153438 0.7 0.464622
Target:  5'- -cGGGCCagGCgCGCGGCCGUcucCCAgGCCa -3'
miRNA:   3'- acUCUGG--UG-GCGCCGGCA---GGUgCGGg -5'
5119 5' -61.9 NC_001798.1 + 153361 0.74 0.26335
Target:  5'- cGAuGACCGCCuCGGCCGccgCCACGCg- -3'
miRNA:   3'- aCU-CUGGUGGcGCCGGCa--GGUGCGgg -5'
5119 5' -61.9 NC_001798.1 + 153233 0.69 0.500722
Target:  5'- cGGGcCCGCgGCGGCgGaggacCCGCGCgCCg -3'
miRNA:   3'- aCUCuGGUGgCGCCGgCa----GGUGCG-GG- -5'
5119 5' -61.9 NC_001798.1 + 153175 0.67 0.634439
Target:  5'- cGGGGcuCCGCCGgccgaGGCCGcCCuCGCCg -3'
miRNA:   3'- aCUCU--GGUGGCg----CCGGCaGGuGCGGg -5'
5119 5' -61.9 NC_001798.1 + 153007 0.73 0.294545
Target:  5'- cGGGGCgguCGCCGgGGCggaGUCCGgGCCCg -3'
miRNA:   3'- aCUCUG---GUGGCgCCGg--CAGGUgCGGG- -5'
5119 5' -61.9 NC_001798.1 + 152715 0.67 0.624698
Target:  5'- gGGGACCAauaGgGGCCGaUCA-GCCCa -3'
miRNA:   3'- aCUCUGGUgg-CgCCGGCaGGUgCGGG- -5'
5119 5' -61.9 NC_001798.1 + 152236 0.7 0.438457
Target:  5'- cGGcGGCCGCuCGgGGCCGgggUC-CGCCCg -3'
miRNA:   3'- aCU-CUGGUG-GCgCCGGCa--GGuGCGGG- -5'
5119 5' -61.9 NC_001798.1 + 151856 0.66 0.692603
Target:  5'- cGGGACCcCCGC-GCCGUgucccCCGUGUCCc -3'
miRNA:   3'- aCUCUGGuGGCGcCGGCA-----GGUGCGGG- -5'
5119 5' -61.9 NC_001798.1 + 151615 0.73 0.30112
Target:  5'- gGGGGCCggGCCGgGGgCGUggCCGCGUCCa -3'
miRNA:   3'- aCUCUGG--UGGCgCCgGCA--GGUGCGGG- -5'
5119 5' -61.9 NC_001798.1 + 151283 0.7 0.429924
Target:  5'- --cGGCCGCCuCGGCC-UCCACGCg- -3'
miRNA:   3'- acuCUGGUGGcGCCGGcAGGUGCGgg -5'
5119 5' -61.9 NC_001798.1 + 151219 0.74 0.275495
Target:  5'- aGGGAgCGCgG-GGCCGUCCGCggguuGCCCg -3'
miRNA:   3'- aCUCUgGUGgCgCCGGCAGGUG-----CGGG- -5'
5119 5' -61.9 NC_001798.1 + 150672 0.75 0.234893
Target:  5'- ---cGCCGCCGCGG-CGUCUuCGCCCa -3'
miRNA:   3'- acucUGGUGGCGCCgGCAGGuGCGGG- -5'
5119 5' -61.9 NC_001798.1 + 150631 0.69 0.482509
Target:  5'- -uGGGCCGCgCGgGGCUGUCUcgcgggggGCGUCCu -3'
miRNA:   3'- acUCUGGUG-GCgCCGGCAGG--------UGCGGG- -5'
5119 5' -61.9 NC_001798.1 + 150377 0.66 0.692603
Target:  5'- -cGGGCgGCgCGggccCGGCCGcgUCCGCGCUCg -3'
miRNA:   3'- acUCUGgUG-GC----GCCGGC--AGGUGCGGG- -5'
5119 5' -61.9 NC_001798.1 + 150231 0.72 0.335684
Target:  5'- gGGGACC-CCG-GGUCcucccUCCGCGCCCg -3'
miRNA:   3'- aCUCUGGuGGCgCCGGc----AGGUGCGGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.