miRNA display CGI


Results 81 - 100 of 179 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5120 3' -58.3 NC_001798.1 + 58387 0.68 0.727078
Target:  5'- uGACGGagccgcgucagaccCUCGCGCGGCGcaggcgGCCaGCGCg -3'
miRNA:   3'- gCUGCC--------------GAGUGCGUCGU------UGGgUGCGa -5'
5120 3' -58.3 NC_001798.1 + 79471 0.68 0.720259
Target:  5'- cCGAgGGC-CACGaGGuCGACCCGCaGCUg -3'
miRNA:   3'- -GCUgCCGaGUGCgUC-GUUGGGUG-CGA- -5'
5120 3' -58.3 NC_001798.1 + 85256 0.68 0.720259
Target:  5'- -cGCGGC-CGCGCGG-GGCCgCGCGCg -3'
miRNA:   3'- gcUGCCGaGUGCGUCgUUGG-GUGCGa -5'
5120 3' -58.3 NC_001798.1 + 109554 0.68 0.720259
Target:  5'- -cGCGGCcuaUgGCGCGGUGGCCCcgaGCGCg -3'
miRNA:   3'- gcUGCCG---AgUGCGUCGUUGGG---UGCGa -5'
5120 3' -58.3 NC_001798.1 + 153036 0.68 0.720259
Target:  5'- cCGcGCGGCggCGCGCGGuUGGCCgGCGCc -3'
miRNA:   3'- -GC-UGCCGa-GUGCGUC-GUUGGgUGCGa -5'
5120 3' -58.3 NC_001798.1 + 410 0.68 0.710457
Target:  5'- cCGcCGaGCUCGCgGCAGCcccuccccCCCGCGCg -3'
miRNA:   3'- -GCuGC-CGAGUG-CGUCGuu------GGGUGCGa -5'
5120 3' -58.3 NC_001798.1 + 149975 0.68 0.710457
Target:  5'- cCGACGGgg-GCGCGGCG-CCCGCGg- -3'
miRNA:   3'- -GCUGCCgagUGCGUCGUuGGGUGCga -5'
5120 3' -58.3 NC_001798.1 + 58826 0.68 0.710457
Target:  5'- uCGuCGGCcagCAC-CAGCAGCgCCGCGUa -3'
miRNA:   3'- -GCuGCCGa--GUGcGUCGUUG-GGUGCGa -5'
5120 3' -58.3 NC_001798.1 + 83855 0.68 0.710457
Target:  5'- gGGCGGCgCugGCgggcccgaggcGGCGACCCccggcccggGCGCUc -3'
miRNA:   3'- gCUGCCGaGugCG-----------UCGUUGGG---------UGCGA- -5'
5120 3' -58.3 NC_001798.1 + 98601 0.68 0.700591
Target:  5'- cCGGCGGCccCG-GCGGCccCCCGCGCc -3'
miRNA:   3'- -GCUGCCGa-GUgCGUCGuuGGGUGCGa -5'
5120 3' -58.3 NC_001798.1 + 121703 0.68 0.694644
Target:  5'- -cGCGGCUCccgccgccgcgacggAgGCGGCGGCCCAC-CUg -3'
miRNA:   3'- gcUGCCGAG---------------UgCGUCGUUGGGUGcGA- -5'
5120 3' -58.3 NC_001798.1 + 1643 0.68 0.691663
Target:  5'- gCGGCGGCgcgucgggguacaggCGCGCGugcGCGGCCucCACGCg -3'
miRNA:   3'- -GCUGCCGa--------------GUGCGU---CGUUGG--GUGCGa -5'
5120 3' -58.3 NC_001798.1 + 20297 0.68 0.690669
Target:  5'- aGGCGGgUC-CgGCAGUAGCCCAUGa- -3'
miRNA:   3'- gCUGCCgAGuG-CGUCGUUGGGUGCga -5'
5120 3' -58.3 NC_001798.1 + 59671 0.68 0.690669
Target:  5'- gCGAcuCGGCUCGCGUgggGGCGGCgggCACGCc -3'
miRNA:   3'- -GCU--GCCGAGUGCG---UCGUUGg--GUGCGa -5'
5120 3' -58.3 NC_001798.1 + 6061 0.68 0.690669
Target:  5'- cCGGCGGCgaGCGgGGC-ACCgACGCa -3'
miRNA:   3'- -GCUGCCGagUGCgUCGuUGGgUGCGa -5'
5120 3' -58.3 NC_001798.1 + 154267 0.68 0.690669
Target:  5'- cCGuccCGGCUgGCGUGcGCAGCCCGgGCc -3'
miRNA:   3'- -GCu--GCCGAgUGCGU-CGUUGGGUgCGa -5'
5120 3' -58.3 NC_001798.1 + 25260 0.68 0.684692
Target:  5'- gGGCGGCUgGCGCcGCcagccgccggggcccAGCCaCACGCc -3'
miRNA:   3'- gCUGCCGAgUGCGuCG---------------UUGG-GUGCGa -5'
5120 3' -58.3 NC_001798.1 + 31154 0.68 0.680699
Target:  5'- gGGCGGCggUGCgGgGGCGACCCGCGg- -3'
miRNA:   3'- gCUGCCGa-GUG-CgUCGUUGGGUGCga -5'
5120 3' -58.3 NC_001798.1 + 2440 0.68 0.680699
Target:  5'- cCGGCGGCUgGCGgcgcCAGCcGCCC-UGCg -3'
miRNA:   3'- -GCUGCCGAgUGC----GUCGuUGGGuGCGa -5'
5120 3' -58.3 NC_001798.1 + 133825 0.68 0.680699
Target:  5'- aGGCGGCUCuguCGgAGCuuCCCAC-Cg -3'
miRNA:   3'- gCUGCCGAGu--GCgUCGuuGGGUGcGa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.