miRNA display CGI


Results 61 - 80 of 179 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5120 3' -58.3 NC_001798.1 + 151579 0.67 0.767992
Target:  5'- gCGuCGGCggGCGUggGGCuGCCCugGCg -3'
miRNA:   3'- -GCuGCCGagUGCG--UCGuUGGGugCGa -5'
5120 3' -58.3 NC_001798.1 + 97808 0.67 0.758645
Target:  5'- -aACGGCUU-CGCGGCGcGCgCGCGCUu -3'
miRNA:   3'- gcUGCCGAGuGCGUCGU-UGgGUGCGA- -5'
5120 3' -58.3 NC_001798.1 + 143000 0.67 0.752984
Target:  5'- -cGCGGCUUGCGCGaccgaauaaccgcccGCAgcuGCUCGCGCa -3'
miRNA:   3'- gcUGCCGAGUGCGU---------------CGU---UGGGUGCGa -5'
5120 3' -58.3 NC_001798.1 + 60249 0.67 0.74919
Target:  5'- gGGCGGCaaaggUgACGCAGguGCgCGCGUUa -3'
miRNA:   3'- gCUGCCG-----AgUGCGUCguUGgGUGCGA- -5'
5120 3' -58.3 NC_001798.1 + 150424 0.67 0.74919
Target:  5'- gCGGCGGCggCGCGgGGCgGACUCcggACGCg -3'
miRNA:   3'- -GCUGCCGa-GUGCgUCG-UUGGG---UGCGa -5'
5120 3' -58.3 NC_001798.1 + 3389 0.67 0.74919
Target:  5'- uCGGgGGUUCGCGCcccGGuCAGCgCCGCGUUc -3'
miRNA:   3'- -GCUgCCGAGUGCG---UC-GUUG-GGUGCGA- -5'
5120 3' -58.3 NC_001798.1 + 131562 0.67 0.74919
Target:  5'- cCGACGGCccggUGCGUAacuGUggUCCGCGCg -3'
miRNA:   3'- -GCUGCCGa---GUGCGU---CGuuGGGUGCGa -5'
5120 3' -58.3 NC_001798.1 + 1371 0.67 0.739634
Target:  5'- gCGcACGGCgUCGCGCccCAGCgCCACGUa -3'
miRNA:   3'- -GC-UGCCG-AGUGCGucGUUG-GGUGCGa -5'
5120 3' -58.3 NC_001798.1 + 75268 0.67 0.739634
Target:  5'- aCGGCGGUccggCuCGCGGCGcgcgaugccGCCCugGCc -3'
miRNA:   3'- -GCUGCCGa---GuGCGUCGU---------UGGGugCGa -5'
5120 3' -58.3 NC_001798.1 + 37447 0.67 0.739634
Target:  5'- ----aGCUCGCGCacguGGCGACCCcCGCUu -3'
miRNA:   3'- gcugcCGAGUGCG----UCGUUGGGuGCGA- -5'
5120 3' -58.3 NC_001798.1 + 71820 0.67 0.739634
Target:  5'- --cCGGC-CACGCcGCugUCCGCGCUg -3'
miRNA:   3'- gcuGCCGaGUGCGuCGuuGGGUGCGA- -5'
5120 3' -58.3 NC_001798.1 + 93250 0.67 0.739634
Target:  5'- uGAgGGCcaggaaACGCccGCGGCCCGCGCc -3'
miRNA:   3'- gCUgCCGag----UGCGu-CGUUGGGUGCGa -5'
5120 3' -58.3 NC_001798.1 + 98788 0.67 0.739634
Target:  5'- cCGcCGGC-CACGcCAGCuGCgCGCGCa -3'
miRNA:   3'- -GCuGCCGaGUGC-GUCGuUGgGUGCGa -5'
5120 3' -58.3 NC_001798.1 + 89310 0.67 0.739634
Target:  5'- --cCGGuCUCGCGC-GCGACCUccucGCGCUc -3'
miRNA:   3'- gcuGCC-GAGUGCGuCGUUGGG----UGCGA- -5'
5120 3' -58.3 NC_001798.1 + 77685 0.67 0.738673
Target:  5'- uGGCGGCccagCGCGCccggggcAGCAGCgaGCGCUg -3'
miRNA:   3'- gCUGCCGa---GUGCG-------UCGUUGggUGCGA- -5'
5120 3' -58.3 NC_001798.1 + 95012 0.68 0.729988
Target:  5'- gGGCGGCgCGgGCcuggaGGCcggGGCCCGCGCg -3'
miRNA:   3'- gCUGCCGaGUgCG-----UCG---UUGGGUGCGa -5'
5120 3' -58.3 NC_001798.1 + 129338 0.68 0.729988
Target:  5'- gGACGGC-CGCGgAGC-GCCCGC-Cg -3'
miRNA:   3'- gCUGCCGaGUGCgUCGuUGGGUGcGa -5'
5120 3' -58.3 NC_001798.1 + 23006 0.68 0.729988
Target:  5'- gGACGGCgucgucUCGcCGCGGCAgcugGCCC-UGCUg -3'
miRNA:   3'- gCUGCCG------AGU-GCGUCGU----UGGGuGCGA- -5'
5120 3' -58.3 NC_001798.1 + 71289 0.68 0.729018
Target:  5'- aCGugGGCUUugGUccagaacAGCAACUCGCcCUc -3'
miRNA:   3'- -GCugCCGAGugCG-------UCGUUGGGUGcGA- -5'
5120 3' -58.3 NC_001798.1 + 37131 0.68 0.728048
Target:  5'- uGACGGCgaggugugugaGCGUGGCcGCUCGCGCc -3'
miRNA:   3'- gCUGCCGag---------UGCGUCGuUGGGUGCGa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.