miRNA display CGI


Results 41 - 60 of 179 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5120 3' -58.3 NC_001798.1 + 39082 0.66 0.794404
Target:  5'- --cUGGCgcagCACGCAGUcgcgcauGGCCUugGCUg -3'
miRNA:   3'- gcuGCCGa---GUGCGUCG-------UUGGGugCGA- -5'
5120 3' -58.3 NC_001798.1 + 150753 0.67 0.789031
Target:  5'- aCGACGGC-CGCGaCGGCAgggccgcccccagACCCAgaucccacccccgccCGCa -3'
miRNA:   3'- -GCUGCCGaGUGC-GUCGU-------------UGGGU---------------GCGa -5'
5120 3' -58.3 NC_001798.1 + 102394 0.67 0.787229
Target:  5'- uCGGCGGCgauggcccccaccaGCGCGGCGAUCUggGCc -3'
miRNA:   3'- -GCUGCCGag------------UGCGUCGUUGGGugCGa -5'
5120 3' -58.3 NC_001798.1 + 54024 0.67 0.786326
Target:  5'- aGAcCGGCaaGCGCAGCGGCggCACGUa -3'
miRNA:   3'- gCU-GCCGagUGCGUCGUUGg-GUGCGa -5'
5120 3' -58.3 NC_001798.1 + 20442 0.67 0.786326
Target:  5'- aGGCGGCUC-CGCuccGCAucugGgCCugGCg -3'
miRNA:   3'- gCUGCCGAGuGCGu--CGU----UgGGugCGa -5'
5120 3' -58.3 NC_001798.1 + 27516 0.67 0.786326
Target:  5'- gCGGgGGCgccCGCGggaaGGCAGCCC-CGCg -3'
miRNA:   3'- -GCUgCCGa--GUGCg---UCGUUGGGuGCGa -5'
5120 3' -58.3 NC_001798.1 + 124264 0.67 0.786326
Target:  5'- -cGCGGUuaUCcUGCGGCAggcgacccgccGCCCGCGCa -3'
miRNA:   3'- gcUGCCG--AGuGCGUCGU-----------UGGGUGCGa -5'
5120 3' -58.3 NC_001798.1 + 24336 0.67 0.778138
Target:  5'- aCGACGGCggcgacgccaaccgcCACGaCGGCGacgacGCCCGCGg- -3'
miRNA:   3'- -GCUGCCGa--------------GUGC-GUCGU-----UGGGUGCga -5'
5120 3' -58.3 NC_001798.1 + 134953 0.67 0.777222
Target:  5'- -uGCGGggCGcCGCGGCcACCCAUGCc -3'
miRNA:   3'- gcUGCCgaGU-GCGUCGuUGGGUGCGa -5'
5120 3' -58.3 NC_001798.1 + 104522 0.67 0.777222
Target:  5'- gCGGCGGCgcgguugacgUCGuCGCGGUGGgCCACGUc -3'
miRNA:   3'- -GCUGCCG----------AGU-GCGUCGUUgGGUGCGa -5'
5120 3' -58.3 NC_001798.1 + 80896 0.67 0.777222
Target:  5'- --cUGGCg-GCGCAGCu-CCCGCGCc -3'
miRNA:   3'- gcuGCCGagUGCGUCGuuGGGUGCGa -5'
5120 3' -58.3 NC_001798.1 + 59773 0.67 0.777222
Target:  5'- cCGGCGGUUCcgggaACGCgGGCGguACCCGgGCc -3'
miRNA:   3'- -GCUGCCGAG-----UGCG-UCGU--UGGGUgCGa -5'
5120 3' -58.3 NC_001798.1 + 23095 0.67 0.776305
Target:  5'- gCGACGGC--GCGCaagaagaAGCGGCCCGCucGCc -3'
miRNA:   3'- -GCUGCCGagUGCG-------UCGUUGGGUG--CGa -5'
5120 3' -58.3 NC_001798.1 + 137923 0.67 0.776305
Target:  5'- gGGCGGCcCGCGCcucccccGGCcGCCCgguccgccgcGCGCUg -3'
miRNA:   3'- gCUGCCGaGUGCG-------UCGuUGGG----------UGCGA- -5'
5120 3' -58.3 NC_001798.1 + 115549 0.67 0.767992
Target:  5'- cCGGCGcGgaCAUGCAGCAGCguuuucugaacgCCugGCg -3'
miRNA:   3'- -GCUGC-CgaGUGCGUCGUUG------------GGugCGa -5'
5120 3' -58.3 NC_001798.1 + 78830 0.67 0.767992
Target:  5'- gCGACGGCcccggccccUgGCGCGGCAcgccggccGCCUggggGCGCUc -3'
miRNA:   3'- -GCUGCCG---------AgUGCGUCGU--------UGGG----UGCGA- -5'
5120 3' -58.3 NC_001798.1 + 26341 0.67 0.767992
Target:  5'- gCGACGccgUGCGCGGCGGCCCggcggagcuGCGCg -3'
miRNA:   3'- -GCUGCcgaGUGCGUCGUUGGG---------UGCGa -5'
5120 3' -58.3 NC_001798.1 + 138395 0.67 0.767992
Target:  5'- uGACGaCcCGCGCGGCGccagccacCCCGCGCUc -3'
miRNA:   3'- gCUGCcGaGUGCGUCGUu-------GGGUGCGA- -5'
5120 3' -58.3 NC_001798.1 + 126723 0.67 0.767992
Target:  5'- uCGugGGggagugcgcucUUCGCGCGGCcgcACCCACGaCa -3'
miRNA:   3'- -GCugCC-----------GAGUGCGUCGu--UGGGUGC-Ga -5'
5120 3' -58.3 NC_001798.1 + 3854 0.67 0.767992
Target:  5'- gGGCGGCUguCGCc-CAGCCCGcCGUa -3'
miRNA:   3'- gCUGCCGAguGCGucGUUGGGU-GCGa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.