miRNA display CGI


Results 41 - 60 of 179 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5120 3' -58.3 NC_001798.1 + 51343 0.7 0.570222
Target:  5'- gGGCGGUUCGCgGguGguGCCCucgcCGCUg -3'
miRNA:   3'- gCUGCCGAGUG-CguCguUGGGu---GCGA- -5'
5120 3' -58.3 NC_001798.1 + 81928 0.7 0.570222
Target:  5'- cCGccuCGGCUCGCGgGGCcuuucccgccCCCACGCUc -3'
miRNA:   3'- -GCu--GCCGAGUGCgUCGuu--------GGGUGCGA- -5'
5120 3' -58.3 NC_001798.1 + 99480 0.7 0.570222
Target:  5'- uCGACGGCUUcuACGCGcGCGACCuCAC-Ca -3'
miRNA:   3'- -GCUGCCGAG--UGCGU-CGUUGG-GUGcGa -5'
5120 3' -58.3 NC_001798.1 + 134147 0.7 0.577195
Target:  5'- cCGACGuCUCGgcccccggggccguCGCGGCcGCCCGCGCc -3'
miRNA:   3'- -GCUGCcGAGU--------------GCGUCGuUGGGUGCGa -5'
5120 3' -58.3 NC_001798.1 + 5394 0.7 0.579191
Target:  5'- gCGGCGGCccguuggUCGCGCcGCcgccgcuccGCCCGCGCg -3'
miRNA:   3'- -GCUGCCG-------AGUGCGuCGu--------UGGGUGCGa -5'
5120 3' -58.3 NC_001798.1 + 116770 0.7 0.58019
Target:  5'- aCGACGGCgcugcugugcUC-CGCGGCG-CCCgACGCg -3'
miRNA:   3'- -GCUGCCG----------AGuGCGUCGUuGGG-UGCGa -5'
5120 3' -58.3 NC_001798.1 + 33823 0.7 0.58019
Target:  5'- aGGgGGCUCGCGCGuucGCAACaCCACa-- -3'
miRNA:   3'- gCUgCCGAGUGCGU---CGUUG-GGUGcga -5'
5120 3' -58.3 NC_001798.1 + 2877 0.7 0.590193
Target:  5'- cCGcCGGC-CACGC-GCAGgucCCCGCGCa -3'
miRNA:   3'- -GCuGCCGaGUGCGuCGUU---GGGUGCGa -5'
5120 3' -58.3 NC_001798.1 + 52500 0.7 0.590193
Target:  5'- gCGcCGGCgcagggacgACGCGGCGGCCgCGCGCg -3'
miRNA:   3'- -GCuGCCGag-------UGCGUCGUUGG-GUGCGa -5'
5120 3' -58.3 NC_001798.1 + 116394 0.7 0.590193
Target:  5'- aCGACGGC-CGgcUGCuGCAcaacacccagGCCCGCGCg -3'
miRNA:   3'- -GCUGCCGaGU--GCGuCGU----------UGGGUGCGa -5'
5120 3' -58.3 NC_001798.1 + 2566 0.7 0.600226
Target:  5'- gGGCGGC-CGCGgGGCGGggggcgUCCGCGCg -3'
miRNA:   3'- gCUGCCGaGUGCgUCGUU------GGGUGCGa -5'
5120 3' -58.3 NC_001798.1 + 116274 0.7 0.600226
Target:  5'- gCGACGGcCUUAUGCGacacGCGGCCCugGa- -3'
miRNA:   3'- -GCUGCC-GAGUGCGU----CGUUGGGugCga -5'
5120 3' -58.3 NC_001798.1 + 62291 0.7 0.610282
Target:  5'- cCGGCGGgagcgcgccaaCUCGCGCucccuggagAGCAuGCCUACGCUg -3'
miRNA:   3'- -GCUGCC-----------GAGUGCG---------UCGU-UGGGUGCGA- -5'
5120 3' -58.3 NC_001798.1 + 2793 0.7 0.610282
Target:  5'- aGGCgcgGGCUC-CGCGGCAGCgCCGgGCc -3'
miRNA:   3'- gCUG---CCGAGuGCGUCGUUG-GGUgCGa -5'
5120 3' -58.3 NC_001798.1 + 108858 0.7 0.610282
Target:  5'- gGGCgGGCUgGCGUucggguGCGACgCCGCGCUc -3'
miRNA:   3'- gCUG-CCGAgUGCGu-----CGUUG-GGUGCGA- -5'
5120 3' -58.3 NC_001798.1 + 83236 0.7 0.610282
Target:  5'- aGACGGC-CGCGgAGgGACCCGC-Cg -3'
miRNA:   3'- gCUGCCGaGUGCgUCgUUGGGUGcGa -5'
5120 3' -58.3 NC_001798.1 + 3121 0.69 0.620354
Target:  5'- -cACGGC-CACGCGGCccgccUCCGCGCg -3'
miRNA:   3'- gcUGCCGaGUGCGUCGuu---GGGUGCGa -5'
5120 3' -58.3 NC_001798.1 + 34112 0.69 0.630434
Target:  5'- gGGCGGUggGCGUacgGGCccGACCCGCGCc -3'
miRNA:   3'- gCUGCCGagUGCG---UCG--UUGGGUGCGa -5'
5120 3' -58.3 NC_001798.1 + 125884 0.69 0.637491
Target:  5'- aGGCGGCcCacuuggaauuggagGCGCGGCuaaaguCCCGCGCg -3'
miRNA:   3'- gCUGCCGaG--------------UGCGUCGuu----GGGUGCGa -5'
5120 3' -58.3 NC_001798.1 + 24798 0.69 0.637491
Target:  5'- gCGACGcGCUggugcugaugcgccUGCGCGGgGACCUGCGCg -3'
miRNA:   3'- -GCUGC-CGA--------------GUGCGUCgUUGGGUGCGa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.