miRNA display CGI


Results 41 - 60 of 179 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5120 3' -58.3 NC_001798.1 + 25088 0.66 0.837835
Target:  5'- gGGCGccGC-CGgGCGGCGcCCCGCGCc -3'
miRNA:   3'- gCUGC--CGaGUgCGUCGUuGGGUGCGa -5'
5120 3' -58.3 NC_001798.1 + 25260 0.68 0.684692
Target:  5'- gGGCGGCUgGCGCcGCcagccgccggggcccAGCCaCACGCc -3'
miRNA:   3'- gCUGCCGAgUGCGuCG---------------UUGG-GUGCGa -5'
5120 3' -58.3 NC_001798.1 + 25889 0.66 0.837835
Target:  5'- cCGACGGgcccgugguCUCGCgGCAGCAcGCCUAC-CUg -3'
miRNA:   3'- -GCUGCC---------GAGUG-CGUCGU-UGGGUGcGA- -5'
5120 3' -58.3 NC_001798.1 + 26341 0.67 0.767992
Target:  5'- gCGACGccgUGCGCGGCGGCCCggcggagcuGCGCg -3'
miRNA:   3'- -GCUGCcgaGUGCGUCGUUGGG---------UGCGa -5'
5120 3' -58.3 NC_001798.1 + 27253 0.69 0.660652
Target:  5'- aGGCGGC-CGCGgGaccGCAGCCCcgugGCGCg -3'
miRNA:   3'- gCUGCCGaGUGCgU---CGUUGGG----UGCGa -5'
5120 3' -58.3 NC_001798.1 + 27516 0.67 0.786326
Target:  5'- gCGGgGGCgccCGCGggaaGGCAGCCC-CGCg -3'
miRNA:   3'- -GCUgCCGa--GUGCg---UCGUUGGGuGCGa -5'
5120 3' -58.3 NC_001798.1 + 28604 0.66 0.835402
Target:  5'- aGACGGC-CGCGC-GCcuGGCCCgacggggguccuggGCGCg -3'
miRNA:   3'- gCUGCCGaGUGCGuCG--UUGGG--------------UGCGa -5'
5120 3' -58.3 NC_001798.1 + 28792 0.66 0.835402
Target:  5'- gCGGCGGCggCGCGCGgguccuccgccgccGCGgGCCCGgGCc -3'
miRNA:   3'- -GCUGCCGa-GUGCGU--------------CGU-UGGGUgCGa -5'
5120 3' -58.3 NC_001798.1 + 31154 0.68 0.680699
Target:  5'- gGGCGGCggUGCgGgGGCGACCCGCGg- -3'
miRNA:   3'- gCUGCCGa-GUG-CgUCGUUGGGUGCga -5'
5120 3' -58.3 NC_001798.1 + 33823 0.7 0.58019
Target:  5'- aGGgGGCUCGCGCGuucGCAACaCCACa-- -3'
miRNA:   3'- gCUgCCGAGUGCGU---CGUUG-GGUGcga -5'
5120 3' -58.3 NC_001798.1 + 33900 0.66 0.829661
Target:  5'- aCGACGcGuUUUGCGgGGCAugcaagucgacACCCGCGCg -3'
miRNA:   3'- -GCUGC-C-GAGUGCgUCGU-----------UGGGUGCGa -5'
5120 3' -58.3 NC_001798.1 + 34112 0.69 0.630434
Target:  5'- gGGCGGUggGCGUacgGGCccGACCCGCGCc -3'
miRNA:   3'- gCUGCCGagUGCG---UCG--UUGGGUGCGa -5'
5120 3' -58.3 NC_001798.1 + 34578 0.75 0.310039
Target:  5'- gGACGGCUCACGCGGCG--CgGCGUc -3'
miRNA:   3'- gCUGCCGAGUGCGUCGUugGgUGCGa -5'
5120 3' -58.3 NC_001798.1 + 35443 0.69 0.640516
Target:  5'- gCGugGGCcgCugGCGccGCGGCCCGucUGCUg -3'
miRNA:   3'- -GCugCCGa-GugCGU--CGUUGGGU--GCGA- -5'
5120 3' -58.3 NC_001798.1 + 36527 0.73 0.446431
Target:  5'- gCGGCGGCcgggcgggggCGCGCGGCGGCCgggcgggggCGCGCg -3'
miRNA:   3'- -GCUGCCGa---------GUGCGUCGUUGG---------GUGCGa -5'
5120 3' -58.3 NC_001798.1 + 36569 0.68 0.680699
Target:  5'- nCGGCGGCcgggcgggggCGCGCGGCGGCCgG-GCg -3'
miRNA:   3'- -GCUGCCGa---------GUGCGUCGUUGGgUgCGa -5'
5120 3' -58.3 NC_001798.1 + 36611 0.73 0.41998
Target:  5'- gCGGCGGCcgggcgggggCGCGCGGCGGCCgggcgggggCGCGCUu -3'
miRNA:   3'- -GCUGCCGa---------GUGCGUCGUUGG---------GUGCGA- -5'
5120 3' -58.3 NC_001798.1 + 37131 0.68 0.728048
Target:  5'- uGACGGCgaggugugugaGCGUGGCcGCUCGCGCc -3'
miRNA:   3'- gCUGCCGag---------UGCGUCGuUGGGUGCGa -5'
5120 3' -58.3 NC_001798.1 + 37447 0.67 0.739634
Target:  5'- ----aGCUCGCGCacguGGCGACCCcCGCUu -3'
miRNA:   3'- gcugcCGAGUGCG----UCGUUGGGuGCGA- -5'
5120 3' -58.3 NC_001798.1 + 38013 0.69 0.640516
Target:  5'- uGAUGGUUC-CGCAGCugaaugGGCCCGUGCa -3'
miRNA:   3'- gCUGCCGAGuGCGUCG------UUGGGUGCGa -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.