miRNA display CGI


Results 21 - 40 of 179 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5120 3' -58.3 NC_001798.1 + 4484 0.66 0.837835
Target:  5'- --cCGGUcCGCGgaccCAGCGGCCCGCGUc -3'
miRNA:   3'- gcuGCCGaGUGC----GUCGUUGGGUGCGa -5'
5120 3' -58.3 NC_001798.1 + 5183 0.71 0.530836
Target:  5'- uGGCGGC-CGCGuCGGUAGCC-GCGCUc -3'
miRNA:   3'- gCUGCCGaGUGC-GUCGUUGGgUGCGA- -5'
5120 3' -58.3 NC_001798.1 + 5394 0.7 0.579191
Target:  5'- gCGGCGGCccguuggUCGCGCcGCcgccgcuccGCCCGCGCg -3'
miRNA:   3'- -GCUGCCG-------AGUGCGuCGu--------UGGGUGCGa -5'
5120 3' -58.3 NC_001798.1 + 6061 0.68 0.690669
Target:  5'- cCGGCGGCgaGCGgGGC-ACCgACGCa -3'
miRNA:   3'- -GCUGCCGagUGCgUCGuUGGgUGCGa -5'
5120 3' -58.3 NC_001798.1 + 9142 0.71 0.550421
Target:  5'- -uGCGGCacgCggGCGCGGCGccGCCCGCGCc -3'
miRNA:   3'- gcUGCCGa--G--UGCGUCGU--UGGGUGCGa -5'
5120 3' -58.3 NC_001798.1 + 11861 0.66 0.829661
Target:  5'- cCGGCuGGCguucgUCGCGCuGcCGACCCauACGCg -3'
miRNA:   3'- -GCUG-CCG-----AGUGCGuC-GUUGGG--UGCGa -5'
5120 3' -58.3 NC_001798.1 + 12035 0.66 0.829661
Target:  5'- gGGCGGCgggggCAUGCGGuCAGugugaCCACGUg -3'
miRNA:   3'- gCUGCCGa----GUGCGUC-GUUg----GGUGCGa -5'
5120 3' -58.3 NC_001798.1 + 15294 0.69 0.660652
Target:  5'- uGGCGGUgguCGCGGCGACCgaaACGUUg -3'
miRNA:   3'- gCUGCCGaguGCGUCGUUGGg--UGCGA- -5'
5120 3' -58.3 NC_001798.1 + 16439 0.66 0.821312
Target:  5'- aCGGCGGCUCGcCGCcGCGACacccuCCAUaCUg -3'
miRNA:   3'- -GCUGCCGAGU-GCGuCGUUG-----GGUGcGA- -5'
5120 3' -58.3 NC_001798.1 + 16976 0.75 0.324316
Target:  5'- -aGCGGCagGCGCAGCAACUC-CGCg -3'
miRNA:   3'- gcUGCCGagUGCGUCGUUGGGuGCGa -5'
5120 3' -58.3 NC_001798.1 + 20297 0.68 0.690669
Target:  5'- aGGCGGgUC-CgGCAGUAGCCCAUGa- -3'
miRNA:   3'- gCUGCCgAGuG-CGUCGUUGGGUGCga -5'
5120 3' -58.3 NC_001798.1 + 20442 0.67 0.786326
Target:  5'- aGGCGGCUC-CGCuccGCAucugGgCCugGCg -3'
miRNA:   3'- gCUGCCGAGuGCGu--CGU----UgGGugCGa -5'
5120 3' -58.3 NC_001798.1 + 22494 0.66 0.798843
Target:  5'- gCGACGGggCgaucguccacacggaGCGCGGCuACCgACGCg -3'
miRNA:   3'- -GCUGCCgaG---------------UGCGUCGuUGGgUGCGa -5'
5120 3' -58.3 NC_001798.1 + 23006 0.68 0.729988
Target:  5'- gGACGGCgucgucUCGcCGCGGCAgcugGCCC-UGCUg -3'
miRNA:   3'- gCUGCCG------AGU-GCGUCGU----UGGGuGCGA- -5'
5120 3' -58.3 NC_001798.1 + 23095 0.67 0.776305
Target:  5'- gCGACGGC--GCGCaagaagaAGCGGCCCGCucGCc -3'
miRNA:   3'- -GCUGCCGagUGCG-------UCGUUGGGUG--CGa -5'
5120 3' -58.3 NC_001798.1 + 23726 0.66 0.828834
Target:  5'- cCGGCGGgUCgagcuggacgccgACGCGGCcuCCgGCGCc -3'
miRNA:   3'- -GCUGCCgAG-------------UGCGUCGuuGGgUGCGa -5'
5120 3' -58.3 NC_001798.1 + 24336 0.67 0.778138
Target:  5'- aCGACGGCggcgacgccaaccgcCACGaCGGCGacgacGCCCGCGg- -3'
miRNA:   3'- -GCUGCCGa--------------GUGC-GUCGU-----UGGGUGCga -5'
5120 3' -58.3 NC_001798.1 + 24567 0.72 0.455453
Target:  5'- gCGGCGGCcggCGCGCggaGGCGGgCCGCGUg -3'
miRNA:   3'- -GCUGCCGa--GUGCG---UCGUUgGGUGCGa -5'
5120 3' -58.3 NC_001798.1 + 24654 0.71 0.560298
Target:  5'- uCGACGGCgacCugGCGGCcguGCCgGgGCUg -3'
miRNA:   3'- -GCUGCCGa--GugCGUCGu--UGGgUgCGA- -5'
5120 3' -58.3 NC_001798.1 + 24798 0.69 0.637491
Target:  5'- gCGACGcGCUggugcugaugcgccUGCGCGGgGACCUGCGCg -3'
miRNA:   3'- -GCUGC-CGA--------------GUGCGUCgUUGGGUGCGa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.