miRNA display CGI


Results 21 - 40 of 179 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5120 3' -58.3 NC_001798.1 + 134953 0.67 0.777222
Target:  5'- -uGCGGggCGcCGCGGCcACCCAUGCc -3'
miRNA:   3'- gcUGCCgaGU-GCGUCGuUGGGUGCGa -5'
5120 3' -58.3 NC_001798.1 + 134147 0.7 0.577195
Target:  5'- cCGACGuCUCGgcccccggggccguCGCGGCcGCCCGCGCc -3'
miRNA:   3'- -GCUGCcGAGU--------------GCGUCGuUGGGUGCGa -5'
5120 3' -58.3 NC_001798.1 + 133825 0.68 0.680699
Target:  5'- aGGCGGCUCuguCGgAGCuuCCCAC-Cg -3'
miRNA:   3'- gCUGCCGAGu--GCgUCGuuGGGUGcGa -5'
5120 3' -58.3 NC_001798.1 + 131562 0.67 0.74919
Target:  5'- cCGACGGCccggUGCGUAacuGUggUCCGCGCg -3'
miRNA:   3'- -GCUGCCGa---GUGCGU---CGuuGGGUGCGa -5'
5120 3' -58.3 NC_001798.1 + 129338 0.68 0.729988
Target:  5'- gGACGGC-CGCGgAGC-GCCCGC-Cg -3'
miRNA:   3'- gCUGCCGaGUGCgUCGuUGGGUGcGa -5'
5120 3' -58.3 NC_001798.1 + 126723 0.67 0.767992
Target:  5'- uCGugGGggagugcgcucUUCGCGCGGCcgcACCCACGaCa -3'
miRNA:   3'- -GCugCC-----------GAGUGCGUCGu--UGGGUGC-Ga -5'
5120 3' -58.3 NC_001798.1 + 125884 0.69 0.637491
Target:  5'- aGGCGGCcCacuuggaauuggagGCGCGGCuaaaguCCCGCGCg -3'
miRNA:   3'- gCUGCCGaG--------------UGCGUCGuu----GGGUGCGa -5'
5120 3' -58.3 NC_001798.1 + 124264 0.67 0.786326
Target:  5'- -cGCGGUuaUCcUGCGGCAggcgacccgccGCCCGCGCa -3'
miRNA:   3'- gcUGCCG--AGuGCGUCGU-----------UGGGUGCGa -5'
5120 3' -58.3 NC_001798.1 + 122628 0.71 0.530836
Target:  5'- ---gGGC-CGCGCuccaaGGCGGCCCGCGCa -3'
miRNA:   3'- gcugCCGaGUGCG-----UCGUUGGGUGCGa -5'
5120 3' -58.3 NC_001798.1 + 122481 0.68 0.680699
Target:  5'- aGACGGCgcugCuGCGUcGCuuuCCCGCGCUc -3'
miRNA:   3'- gCUGCCGa---G-UGCGuCGuu-GGGUGCGA- -5'
5120 3' -58.3 NC_001798.1 + 121703 0.68 0.694644
Target:  5'- -cGCGGCUCccgccgccgcgacggAgGCGGCGGCCCAC-CUg -3'
miRNA:   3'- gcUGCCGAG---------------UgCGUCGUUGGGUGcGA- -5'
5120 3' -58.3 NC_001798.1 + 118772 0.72 0.464572
Target:  5'- -cGCGGUaaUCACGCGgguGCuGCCCACGCg -3'
miRNA:   3'- gcUGCCG--AGUGCGU---CGuUGGGUGCGa -5'
5120 3' -58.3 NC_001798.1 + 118069 0.66 0.835402
Target:  5'- gCGACcccgcccuGCU-ACGCAGCGcccgcgauggggagGCCCACGCg -3'
miRNA:   3'- -GCUGc-------CGAgUGCGUCGU--------------UGGGUGCGa -5'
5120 3' -58.3 NC_001798.1 + 116770 0.7 0.58019
Target:  5'- aCGACGGCgcugcugugcUC-CGCGGCG-CCCgACGCg -3'
miRNA:   3'- -GCUGCCG----------AGuGCGUCGUuGGG-UGCGa -5'
5120 3' -58.3 NC_001798.1 + 116715 0.69 0.660652
Target:  5'- uCGACGggcccgccauGCUCACGCuGCAgguGCUgGCGCa -3'
miRNA:   3'- -GCUGC----------CGAGUGCGuCGU---UGGgUGCGa -5'
5120 3' -58.3 NC_001798.1 + 116394 0.7 0.590193
Target:  5'- aCGACGGC-CGgcUGCuGCAcaacacccagGCCCGCGCg -3'
miRNA:   3'- -GCUGCCGaGU--GCGuCGU----------UGGGUGCGa -5'
5120 3' -58.3 NC_001798.1 + 116274 0.7 0.600226
Target:  5'- gCGACGGcCUUAUGCGacacGCGGCCCugGa- -3'
miRNA:   3'- -GCUGCC-GAGUGCGU----CGUUGGGugCga -5'
5120 3' -58.3 NC_001798.1 + 115549 0.67 0.767992
Target:  5'- cCGGCGcGgaCAUGCAGCAGCguuuucugaacgCCugGCg -3'
miRNA:   3'- -GCUGC-CgaGUGCGUCGUUG------------GGugCGa -5'
5120 3' -58.3 NC_001798.1 + 114528 0.66 0.829661
Target:  5'- uCGcCaGCUgCGCGCcauccAGCAGCUCGCGCg -3'
miRNA:   3'- -GCuGcCGA-GUGCG-----UCGUUGGGUGCGa -5'
5120 3' -58.3 NC_001798.1 + 114377 0.69 0.660652
Target:  5'- gCGACGGC-C-CGCaccccgucgAGCAGCCCGUGCa -3'
miRNA:   3'- -GCUGCCGaGuGCG---------UCGUUGGGUGCGa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.