miRNA display CGI


Results 1 - 20 of 179 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5120 3' -58.3 NC_001798.1 + 154415 0.76 0.276456
Target:  5'- gCGGCGGCgggCGgGCGGCAGggcagcCCCGCGCg -3'
miRNA:   3'- -GCUGCCGa--GUgCGUCGUU------GGGUGCGa -5'
5120 3' -58.3 NC_001798.1 + 154267 0.68 0.690669
Target:  5'- cCGuccCGGCUgGCGUGcGCAGCCCGgGCc -3'
miRNA:   3'- -GCu--GCCGAgUGCGU-CGUUGGGUgCGa -5'
5120 3' -58.3 NC_001798.1 + 153819 0.72 0.492481
Target:  5'- gCGGCGGCagGCGCGGCGugcgggGCCUccgGCGCc -3'
miRNA:   3'- -GCUGCCGagUGCGUCGU------UGGG---UGCGa -5'
5120 3' -58.3 NC_001798.1 + 153764 0.74 0.378077
Target:  5'- gGGCGGaaggggGCGCuGCGGCCCGCGCUc -3'
miRNA:   3'- gCUGCCgag---UGCGuCGUUGGGUGCGA- -5'
5120 3' -58.3 NC_001798.1 + 153224 0.75 0.345877
Target:  5'- cCGACGGCccgggCcCGCGGCGgcggaggACCCGCGCg -3'
miRNA:   3'- -GCUGCCGa----GuGCGUCGU-------UGGGUGCGa -5'
5120 3' -58.3 NC_001798.1 + 153036 0.68 0.720259
Target:  5'- cCGcGCGGCggCGCGCGGuUGGCCgGCGCc -3'
miRNA:   3'- -GC-UGCCGa-GUGCGUC-GUUGGgUGCGa -5'
5120 3' -58.3 NC_001798.1 + 151579 0.67 0.767992
Target:  5'- gCGuCGGCggGCGUggGGCuGCCCugGCg -3'
miRNA:   3'- -GCuGCCGagUGCG--UCGuUGGGugCGa -5'
5120 3' -58.3 NC_001798.1 + 150753 0.67 0.789031
Target:  5'- aCGACGGC-CGCGaCGGCAgggccgcccccagACCCAgaucccacccccgccCGCa -3'
miRNA:   3'- -GCUGCCGaGUGC-GUCGU-------------UGGGU---------------GCGa -5'
5120 3' -58.3 NC_001798.1 + 150460 0.72 0.48309
Target:  5'- gCGACGGC-CGCGCGGgGGCgCGCGg- -3'
miRNA:   3'- -GCUGCCGaGUGCGUCgUUGgGUGCga -5'
5120 3' -58.3 NC_001798.1 + 150424 0.67 0.74919
Target:  5'- gCGGCGGCggCGCGgGGCgGACUCcggACGCg -3'
miRNA:   3'- -GCUGCCGa-GUGCgUCG-UUGGG---UGCGa -5'
5120 3' -58.3 NC_001798.1 + 150131 0.66 0.821312
Target:  5'- aCGA-GGC-CGCGgGGCccgaguccGACCCGCGCc -3'
miRNA:   3'- -GCUgCCGaGUGCgUCG--------UUGGGUGCGa -5'
5120 3' -58.3 NC_001798.1 + 149975 0.68 0.710457
Target:  5'- cCGACGGgg-GCGCGGCG-CCCGCGg- -3'
miRNA:   3'- -GCUGCCgagUGCGUCGUuGGGUGCga -5'
5120 3' -58.3 NC_001798.1 + 149461 0.78 0.223422
Target:  5'- gCGGCGGCUcCACGCGggggccGCGGCCCGCaGCa -3'
miRNA:   3'- -GCUGCCGA-GUGCGU------CGUUGGGUG-CGa -5'
5120 3' -58.3 NC_001798.1 + 149419 0.69 0.660652
Target:  5'- gGGgGGcCUCACGCAGUuGCgCGCGUg -3'
miRNA:   3'- gCUgCC-GAGUGCGUCGuUGgGUGCGa -5'
5120 3' -58.3 NC_001798.1 + 146592 0.74 0.35432
Target:  5'- aGACgGGC-CGCGgcgcCAGCGGCCCACGCc -3'
miRNA:   3'- gCUG-CCGaGUGC----GUCGUUGGGUGCGa -5'
5120 3' -58.3 NC_001798.1 + 143000 0.67 0.752984
Target:  5'- -cGCGGCUUGCGCGaccgaauaaccgcccGCAgcuGCUCGCGCa -3'
miRNA:   3'- gcUGCCGAGUGCGU---------------CGU---UGGGUGCGa -5'
5120 3' -58.3 NC_001798.1 + 141582 0.73 0.428692
Target:  5'- gCGGCGGCggCACGCGaCGGCCgGCGUg -3'
miRNA:   3'- -GCUGCCGa-GUGCGUcGUUGGgUGCGa -5'
5120 3' -58.3 NC_001798.1 + 140671 1.08 0.002145
Target:  5'- uCGACGGCUCACGCAGCAACCCACGCUg -3'
miRNA:   3'- -GCUGCCGAGUGCGUCGUUGGGUGCGA- -5'
5120 3' -58.3 NC_001798.1 + 138395 0.67 0.767992
Target:  5'- uGACGaCcCGCGCGGCGccagccacCCCGCGCUc -3'
miRNA:   3'- gCUGCcGaGUGCGUCGUu-------GGGUGCGA- -5'
5120 3' -58.3 NC_001798.1 + 137923 0.67 0.776305
Target:  5'- gGGCGGCcCGCGCcucccccGGCcGCCCgguccgccgcGCGCUg -3'
miRNA:   3'- gCUGCCGaGUGCG-------UCGuUGGG----------UGCGA- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.