miRNA display CGI


Results 21 - 40 of 179 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5120 3' -58.3 NC_001798.1 + 106708 0.73 0.43751
Target:  5'- cCGACGGC-CGCGCGGCGuCCCGuccuagccauCGCc -3'
miRNA:   3'- -GCUGCCGaGUGCGUCGUuGGGU----------GCGa -5'
5120 3' -58.3 NC_001798.1 + 46630 0.73 0.43751
Target:  5'- gGACGGUUC-CGCGGUAGCCCGaGUc -3'
miRNA:   3'- gCUGCCGAGuGCGUCGUUGGGUgCGa -5'
5120 3' -58.3 NC_001798.1 + 36527 0.73 0.446431
Target:  5'- gCGGCGGCcgggcgggggCGCGCGGCGGCCgggcgggggCGCGCg -3'
miRNA:   3'- -GCUGCCGa---------GUGCGUCGUUGG---------GUGCGa -5'
5120 3' -58.3 NC_001798.1 + 1308 0.72 0.455453
Target:  5'- ---gGGCUCGaGCAGC-GCCCGCGCg -3'
miRNA:   3'- gcugCCGAGUgCGUCGuUGGGUGCGa -5'
5120 3' -58.3 NC_001798.1 + 24567 0.72 0.455453
Target:  5'- gCGGCGGCcggCGCGCggaGGCGGgCCGCGUg -3'
miRNA:   3'- -GCUGCCGa--GUGCG---UCGUUgGGUGCGa -5'
5120 3' -58.3 NC_001798.1 + 92105 0.72 0.455453
Target:  5'- aCGACGGCggGCaGCAGCcgucGACCaCGCGCg -3'
miRNA:   3'- -GCUGCCGagUG-CGUCG----UUGG-GUGCGa -5'
5120 3' -58.3 NC_001798.1 + 106223 0.72 0.455453
Target:  5'- -cGCGGCUgACGC-GCAGCgUACGCUg -3'
miRNA:   3'- gcUGCCGAgUGCGuCGUUGgGUGCGA- -5'
5120 3' -58.3 NC_001798.1 + 118772 0.72 0.464572
Target:  5'- -cGCGGUaaUCACGCGgguGCuGCCCACGCg -3'
miRNA:   3'- gcUGCCG--AGUGCGU---CGuUGGGUGCGa -5'
5120 3' -58.3 NC_001798.1 + 85673 0.72 0.465489
Target:  5'- cCGACGGCggggugcccgggcgcCACGCccagaAGCAACCCAgGCc -3'
miRNA:   3'- -GCUGCCGa--------------GUGCG-----UCGUUGGGUgCGa -5'
5120 3' -58.3 NC_001798.1 + 150460 0.72 0.48309
Target:  5'- gCGACGGC-CGCGCGGgGGCgCGCGg- -3'
miRNA:   3'- -GCUGCCGaGUGCGUCgUUGgGUGCga -5'
5120 3' -58.3 NC_001798.1 + 110898 0.72 0.48309
Target:  5'- cCGGCGGUUCGCGUgcggccAGCcGCCCcCGCc -3'
miRNA:   3'- -GCUGCCGAGUGCG------UCGuUGGGuGCGa -5'
5120 3' -58.3 NC_001798.1 + 77030 0.72 0.48309
Target:  5'- gCGACGGCUCugGCcggccuGCAuCCCGC-CUu -3'
miRNA:   3'- -GCUGCCGAGugCGu-----CGUuGGGUGcGA- -5'
5120 3' -58.3 NC_001798.1 + 153819 0.72 0.492481
Target:  5'- gCGGCGGCagGCGCGGCGugcgggGCCUccgGCGCc -3'
miRNA:   3'- -GCUGCCGagUGCGUCGU------UGGG---UGCGa -5'
5120 3' -58.3 NC_001798.1 + 2275 0.72 0.492481
Target:  5'- gGGCGGCgcagCGCGCGGCcagcgaggccAGCgCGCGCg -3'
miRNA:   3'- gCUGCCGa---GUGCGUCG----------UUGgGUGCGa -5'
5120 3' -58.3 NC_001798.1 + 103041 0.72 0.501956
Target:  5'- uCGGCGGcCUCGCGUcGCAcCCCcucGCGCg -3'
miRNA:   3'- -GCUGCC-GAGUGCGuCGUuGGG---UGCGa -5'
5120 3' -58.3 NC_001798.1 + 106088 0.71 0.521138
Target:  5'- uGGCGGU---CGCGGCGACCCgGCGCc -3'
miRNA:   3'- gCUGCCGaguGCGUCGUUGGG-UGCGa -5'
5120 3' -58.3 NC_001798.1 + 122628 0.71 0.530836
Target:  5'- ---gGGC-CGCGCuccaaGGCGGCCCGCGCa -3'
miRNA:   3'- gcugCCGaGUGCG-----UCGUUGGGUGCGa -5'
5120 3' -58.3 NC_001798.1 + 5183 0.71 0.530836
Target:  5'- uGGCGGC-CGCGuCGGUAGCC-GCGCUc -3'
miRNA:   3'- gCUGCCGaGUGC-GUCGUUGGgUGCGA- -5'
5120 3' -58.3 NC_001798.1 + 9142 0.71 0.550421
Target:  5'- -uGCGGCacgCggGCGCGGCGccGCCCGCGCc -3'
miRNA:   3'- gcUGCCGa--G--UGCGUCGU--UGGGUGCGa -5'
5120 3' -58.3 NC_001798.1 + 24654 0.71 0.560298
Target:  5'- uCGACGGCgacCugGCGGCcguGCCgGgGCUg -3'
miRNA:   3'- -GCUGCCGa--GugCGUCGu--UGGgUgCGA- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.