miRNA display CGI


Results 1 - 20 of 33 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5120 5' -53.4 NC_001798.1 + 1222 0.66 0.945896
Target:  5'- -----cGGccCGCGGCCGACGCCcAGc -3'
miRNA:   3'- uuuucaCCuaGUGCCGGUUGCGG-UCa -5'
5120 5' -53.4 NC_001798.1 + 3494 0.67 0.933246
Target:  5'- --cGGcGGcUCAUGGCCAcggcggccgccacguGCGCCAGg -3'
miRNA:   3'- uuuUCaCCuAGUGCCGGU---------------UGCGGUCa -5'
5120 5' -53.4 NC_001798.1 + 3568 0.79 0.36237
Target:  5'- -cAGGUGGggCACGGCCcGCGCCAc- -3'
miRNA:   3'- uuUUCACCuaGUGCCGGuUGCGGUca -5'
5120 5' -53.4 NC_001798.1 + 4023 0.68 0.907917
Target:  5'- ---cGUGGcGUCGCGGCCGGCcaccGCCGc- -3'
miRNA:   3'- uuuuCACC-UAGUGCCGGUUG----CGGUca -5'
5120 5' -53.4 NC_001798.1 + 17823 0.66 0.945896
Target:  5'- ---cGUGGAUCGCGaaucCCAGC-CCGGUc -3'
miRNA:   3'- uuuuCACCUAGUGCc---GGUUGcGGUCA- -5'
5120 5' -53.4 NC_001798.1 + 24559 0.69 0.857759
Target:  5'- --cGGUGGuggCgGCGGCCGGCGCgCGGa -3'
miRNA:   3'- uuuUCACCua-G-UGCCGGUUGCG-GUCa -5'
5120 5' -53.4 NC_001798.1 + 43688 0.73 0.634549
Target:  5'- -uGGGUGG-UCACGGCCcggagaugcGugGCCAGg -3'
miRNA:   3'- uuUUCACCuAGUGCCGG---------UugCGGUCa -5'
5120 5' -53.4 NC_001798.1 + 50219 0.67 0.914106
Target:  5'- aGGAGGUGGAUaugACGcccGCCGACGCCcuGGa -3'
miRNA:   3'- -UUUUCACCUAg--UGC---CGGUUGCGG--UCa -5'
5120 5' -53.4 NC_001798.1 + 51226 0.66 0.958399
Target:  5'- -cAGGUccGUUACGGCCAGgaGCCAGUc -3'
miRNA:   3'- uuUUCAccUAGUGCCGGUUg-CGGUCA- -5'
5120 5' -53.4 NC_001798.1 + 53438 0.69 0.857759
Target:  5'- cGAGGUGGAgcugUCggGCGGCCAgcugagccGCGCCAu- -3'
miRNA:   3'- uUUUCACCU----AG--UGCCGGU--------UGCGGUca -5'
5120 5' -53.4 NC_001798.1 + 53621 0.66 0.962084
Target:  5'- cAAGAGcGGGgccgcCGCGGCCAaguACGCCGc- -3'
miRNA:   3'- -UUUUCaCCUa----GUGCCGGU---UGCGGUca -5'
5120 5' -53.4 NC_001798.1 + 55966 0.66 0.962084
Target:  5'- -----cGGAaCACGaGCCcGCGCCGGg -3'
miRNA:   3'- uuuucaCCUaGUGC-CGGuUGCGGUCa -5'
5120 5' -53.4 NC_001798.1 + 58103 0.66 0.945896
Target:  5'- -----aGGGUCGCGGCC-GC-CCAGg -3'
miRNA:   3'- uuuucaCCUAGUGCCGGuUGcGGUCa -5'
5120 5' -53.4 NC_001798.1 + 58813 0.66 0.954476
Target:  5'- aAGGGGaUGGAcgUCGuCGGCCAGCaCCAGc -3'
miRNA:   3'- -UUUUC-ACCU--AGU-GCCGGUUGcGGUCa -5'
5120 5' -53.4 NC_001798.1 + 60877 0.66 0.962084
Target:  5'- cGAAGGgGGGcgGCGGCCGcacCGCCGGg -3'
miRNA:   3'- -UUUUCaCCUagUGCCGGUu--GCGGUCa -5'
5120 5' -53.4 NC_001798.1 + 73957 0.68 0.887853
Target:  5'- -cGAGUGGAcgcgCGCGGCCGcggGCuCCGGg -3'
miRNA:   3'- uuUUCACCUa---GUGCCGGU---UGcGGUCa -5'
5120 5' -53.4 NC_001798.1 + 76902 0.67 0.914106
Target:  5'- cGGGGUGGAcCGaccUGGCCGAUGCCGu- -3'
miRNA:   3'- uUUUCACCUaGU---GCCGGUUGCGGUca -5'
5120 5' -53.4 NC_001798.1 + 77214 0.67 0.936317
Target:  5'- --cGGUGGA-CGCGGCCGugcgggcgcaugGCGCCc-- -3'
miRNA:   3'- uuuUCACCUaGUGCCGGU------------UGCGGuca -5'
5120 5' -53.4 NC_001798.1 + 77855 0.7 0.824188
Target:  5'- -----aGGcgcUCGCGGCCAACGCCGa- -3'
miRNA:   3'- uuuucaCCu--AGUGCCGGUUGCGGUca -5'
5120 5' -53.4 NC_001798.1 + 102110 0.67 0.914106
Target:  5'- ---cGUGGGUaCGCGcGCgCAuguGCGCCAGUu -3'
miRNA:   3'- uuuuCACCUA-GUGC-CG-GU---UGCGGUCA- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.