Results 1 - 20 of 33 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. |
strand![]() |
Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
5120 | 5' | -53.4 | NC_001798.1 | + | 140705 | 0.91 | 0.060005 |
Target: 5'- gAAAAGUGGAUCAC-GCCAACGCCAGUc -3' miRNA: 3'- -UUUUCACCUAGUGcCGGUUGCGGUCA- -5' |
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5120 | 5' | -53.4 | NC_001798.1 | + | 3494 | 0.67 | 0.933246 |
Target: 5'- --cGGcGGcUCAUGGCCAcggcggccgccacguGCGCCAGg -3' miRNA: 3'- uuuUCaCCuAGUGCCGGU---------------UGCGGUCa -5' |
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5120 | 5' | -53.4 | NC_001798.1 | + | 145916 | 0.67 | 0.931147 |
Target: 5'- --cGGcgGGAUCGCGGCgAGacgcaGCCGGg -3' miRNA: 3'- uuuUCa-CCUAGUGCCGgUUg----CGGUCa -5' |
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5120 | 5' | -53.4 | NC_001798.1 | + | 116421 | 0.67 | 0.931147 |
Target: 5'- -----aGGcccgCGCGGCCGACGCCGc- -3' miRNA: 3'- uuuucaCCua--GUGCCGGUUGCGGUca -5' |
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5120 | 5' | -53.4 | NC_001798.1 | + | 108583 | 0.67 | 0.925722 |
Target: 5'- ----cUGGGuaacauUCGCGGCCG-CGCCGGa -3' miRNA: 3'- uuuucACCU------AGUGCCGGUuGCGGUCa -5' |
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5120 | 5' | -53.4 | NC_001798.1 | + | 50219 | 0.67 | 0.914106 |
Target: 5'- aGGAGGUGGAUaugACGcccGCCGACGCCcuGGa -3' miRNA: 3'- -UUUUCACCUAg--UGC---CGGUUGCGG--UCa -5' |
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5120 | 5' | -53.4 | NC_001798.1 | + | 102110 | 0.67 | 0.914106 |
Target: 5'- ---cGUGGGUaCGCGcGCgCAuguGCGCCAGUu -3' miRNA: 3'- uuuuCACCUA-GUGC-CG-GU---UGCGGUCA- -5' |
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5120 | 5' | -53.4 | NC_001798.1 | + | 76902 | 0.67 | 0.914106 |
Target: 5'- cGGGGUGGAcCGaccUGGCCGAUGCCGu- -3' miRNA: 3'- uUUUCACCUaGU---GCCGGUUGCGGUca -5' |
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5120 | 5' | -53.4 | NC_001798.1 | + | 102194 | 0.68 | 0.907917 |
Target: 5'- cGGAAGccUGGcgCGCGGC--GCGCCGGg -3' miRNA: 3'- -UUUUC--ACCuaGUGCCGguUGCGGUCa -5' |
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5120 | 5' | -53.4 | NC_001798.1 | + | 77214 | 0.67 | 0.936317 |
Target: 5'- --cGGUGGA-CGCGGCCGugcgggcgcaugGCGCCc-- -3' miRNA: 3'- uuuUCACCUaGUGCCGGU------------UGCGGuca -5' |
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5120 | 5' | -53.4 | NC_001798.1 | + | 130998 | 0.67 | 0.941233 |
Target: 5'- ---uGUGGcAUCGCcauacgGGCCGcCGCCAGg -3' miRNA: 3'- uuuuCACC-UAGUG------CCGGUuGCGGUCa -5' |
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5120 | 5' | -53.4 | NC_001798.1 | + | 134986 | 0.67 | 0.941233 |
Target: 5'- uGGGGGccUGGccCGCGGUgGGCGCCAGg -3' miRNA: 3'- -UUUUC--ACCuaGUGCCGgUUGCGGUCa -5' |
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5120 | 5' | -53.4 | NC_001798.1 | + | 60877 | 0.66 | 0.962084 |
Target: 5'- cGAAGGgGGGcgGCGGCCGcacCGCCGGg -3' miRNA: 3'- -UUUUCaCCUagUGCCGGUu--GCGGUCa -5' |
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5120 | 5' | -53.4 | NC_001798.1 | + | 55966 | 0.66 | 0.962084 |
Target: 5'- -----cGGAaCACGaGCCcGCGCCGGg -3' miRNA: 3'- uuuucaCCUaGUGC-CGGuUGCGGUCa -5' |
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5120 | 5' | -53.4 | NC_001798.1 | + | 51226 | 0.66 | 0.958399 |
Target: 5'- -cAGGUccGUUACGGCCAGgaGCCAGUc -3' miRNA: 3'- uuUUCAccUAGUGCCGGUUg-CGGUCA- -5' |
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5120 | 5' | -53.4 | NC_001798.1 | + | 58813 | 0.66 | 0.954476 |
Target: 5'- aAGGGGaUGGAcgUCGuCGGCCAGCaCCAGc -3' miRNA: 3'- -UUUUC-ACCU--AGU-GCCGGUUGcGGUCa -5' |
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5120 | 5' | -53.4 | NC_001798.1 | + | 119877 | 0.66 | 0.954476 |
Target: 5'- aAAAAGgccggggGGAUCcCGGUCGGggcCGCCAGg -3' miRNA: 3'- -UUUUCa------CCUAGuGCCGGUU---GCGGUCa -5' |
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5120 | 5' | -53.4 | NC_001798.1 | + | 1222 | 0.66 | 0.945896 |
Target: 5'- -----cGGccCGCGGCCGACGCCcAGc -3' miRNA: 3'- uuuucaCCuaGUGCCGGUUGCGG-UCa -5' |
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5120 | 5' | -53.4 | NC_001798.1 | + | 58103 | 0.66 | 0.945896 |
Target: 5'- -----aGGGUCGCGGCC-GC-CCAGg -3' miRNA: 3'- uuuucaCCUAGUGCCGGuUGcGGUCa -5' |
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5120 | 5' | -53.4 | NC_001798.1 | + | 17823 | 0.66 | 0.945896 |
Target: 5'- ---cGUGGAUCGCGaaucCCAGC-CCGGUc -3' miRNA: 3'- uuuuCACCUAGUGCc---GGUUGcGGUCA- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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