Results 21 - 33 of 33 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
5120 | 5' | -53.4 | NC_001798.1 | + | 58103 | 0.66 | 0.945896 |
Target: 5'- -----aGGGUCGCGGCC-GC-CCAGg -3' miRNA: 3'- uuuucaCCUAGUGCCGGuUGcGGUCa -5' |
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5120 | 5' | -53.4 | NC_001798.1 | + | 55966 | 0.66 | 0.962084 |
Target: 5'- -----cGGAaCACGaGCCcGCGCCGGg -3' miRNA: 3'- uuuucaCCUaGUGC-CGGuUGCGGUCa -5' |
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5120 | 5' | -53.4 | NC_001798.1 | + | 53621 | 0.66 | 0.962084 |
Target: 5'- cAAGAGcGGGgccgcCGCGGCCAaguACGCCGc- -3' miRNA: 3'- -UUUUCaCCUa----GUGCCGGU---UGCGGUca -5' |
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5120 | 5' | -53.4 | NC_001798.1 | + | 53438 | 0.69 | 0.857759 |
Target: 5'- cGAGGUGGAgcugUCggGCGGCCAgcugagccGCGCCAu- -3' miRNA: 3'- uUUUCACCU----AG--UGCCGGU--------UGCGGUca -5' |
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5120 | 5' | -53.4 | NC_001798.1 | + | 51226 | 0.66 | 0.958399 |
Target: 5'- -cAGGUccGUUACGGCCAGgaGCCAGUc -3' miRNA: 3'- uuUUCAccUAGUGCCGGUUg-CGGUCA- -5' |
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5120 | 5' | -53.4 | NC_001798.1 | + | 50219 | 0.67 | 0.914106 |
Target: 5'- aGGAGGUGGAUaugACGcccGCCGACGCCcuGGa -3' miRNA: 3'- -UUUUCACCUAg--UGC---CGGUUGCGG--UCa -5' |
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5120 | 5' | -53.4 | NC_001798.1 | + | 43688 | 0.73 | 0.634549 |
Target: 5'- -uGGGUGG-UCACGGCCcggagaugcGugGCCAGg -3' miRNA: 3'- uuUUCACCuAGUGCCGG---------UugCGGUCa -5' |
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5120 | 5' | -53.4 | NC_001798.1 | + | 24559 | 0.69 | 0.857759 |
Target: 5'- --cGGUGGuggCgGCGGCCGGCGCgCGGa -3' miRNA: 3'- uuuUCACCua-G-UGCCGGUUGCG-GUCa -5' |
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5120 | 5' | -53.4 | NC_001798.1 | + | 17823 | 0.66 | 0.945896 |
Target: 5'- ---cGUGGAUCGCGaaucCCAGC-CCGGUc -3' miRNA: 3'- uuuuCACCUAGUGCc---GGUUGcGGUCA- -5' |
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5120 | 5' | -53.4 | NC_001798.1 | + | 4023 | 0.68 | 0.907917 |
Target: 5'- ---cGUGGcGUCGCGGCCGGCcaccGCCGc- -3' miRNA: 3'- uuuuCACC-UAGUGCCGGUUG----CGGUca -5' |
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5120 | 5' | -53.4 | NC_001798.1 | + | 3568 | 0.79 | 0.36237 |
Target: 5'- -cAGGUGGggCACGGCCcGCGCCAc- -3' miRNA: 3'- uuUUCACCuaGUGCCGGuUGCGGUca -5' |
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5120 | 5' | -53.4 | NC_001798.1 | + | 3494 | 0.67 | 0.933246 |
Target: 5'- --cGGcGGcUCAUGGCCAcggcggccgccacguGCGCCAGg -3' miRNA: 3'- uuuUCaCCuAGUGCCGGU---------------UGCGGUCa -5' |
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5120 | 5' | -53.4 | NC_001798.1 | + | 1222 | 0.66 | 0.945896 |
Target: 5'- -----cGGccCGCGGCCGACGCCcAGc -3' miRNA: 3'- uuuucaCCuaGUGCCGGUUGCGG-UCa -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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