miRNA display CGI


Results 1 - 20 of 90 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5121 3' -60.7 NC_001798.1 + 134936 0.66 0.763413
Target:  5'- -gUCGG-CGCGugaccuggUGCGGGGCGCcgcgGCCa -3'
miRNA:   3'- ggAGCCaGUGU--------GUGCCCCGCGa---CGGc -5'
5121 3' -60.7 NC_001798.1 + 117446 0.66 0.763413
Target:  5'- aCCUCGGc----CGCGGGGCccccccGCUGCUa -3'
miRNA:   3'- -GGAGCCaguguGUGCCCCG------CGACGGc -5'
5121 3' -60.7 NC_001798.1 + 85260 0.66 0.763413
Target:  5'- gCCgcgCGGggcCGCGCGCgaggcuucgGGGGgGCggggGCCGg -3'
miRNA:   3'- -GGa--GCCa--GUGUGUG---------CCCCgCGa---CGGC- -5'
5121 3' -60.7 NC_001798.1 + 80697 0.66 0.763413
Target:  5'- uCCUCGG-CGCGCccgucgUGGuGGCGCU-CCGc -3'
miRNA:   3'- -GGAGCCaGUGUGu-----GCC-CCGCGAcGGC- -5'
5121 3' -60.7 NC_001798.1 + 4835 0.66 0.763413
Target:  5'- aCC-CGGgcCGCGCgGCGGGGCGacgGuCCGg -3'
miRNA:   3'- -GGaGCCa-GUGUG-UGCCCCGCga-C-GGC- -5'
5121 3' -60.7 NC_001798.1 + 105718 0.66 0.754281
Target:  5'- --gCGGUCgACACccaGGGGCuGUUGUCGg -3'
miRNA:   3'- ggaGCCAG-UGUGug-CCCCG-CGACGGC- -5'
5121 3' -60.7 NC_001798.1 + 129522 0.66 0.754281
Target:  5'- gCCUCGcGUUcu-C-CGGGGCGCgGCCc -3'
miRNA:   3'- -GGAGC-CAGuguGuGCCCCGCGaCGGc -5'
5121 3' -60.7 NC_001798.1 + 129286 0.66 0.754281
Target:  5'- uCCUCGGcaggCAC-CGCGcGGGCGCggaggagGgCGu -3'
miRNA:   3'- -GGAGCCa---GUGuGUGC-CCCGCGa------CgGC- -5'
5121 3' -60.7 NC_001798.1 + 31553 0.66 0.754281
Target:  5'- ---aGGUCugcCACAgucguCGGGGCGC-GCCGc -3'
miRNA:   3'- ggagCCAGu--GUGU-----GCCCCGCGaCGGC- -5'
5121 3' -60.7 NC_001798.1 + 150796 0.66 0.745051
Target:  5'- cCCcCGccCGCA-ACGGGGCGCcGCCGc -3'
miRNA:   3'- -GGaGCcaGUGUgUGCCCCGCGaCGGC- -5'
5121 3' -60.7 NC_001798.1 + 68105 0.66 0.745051
Target:  5'- --aCGG--ACGCACGGGGCcGCgcacgGCCa -3'
miRNA:   3'- ggaGCCagUGUGUGCCCCG-CGa----CGGc -5'
5121 3' -60.7 NC_001798.1 + 68597 0.66 0.745051
Target:  5'- gCCUCcaGUC-CGCGCGGGG-GgaGCUGg -3'
miRNA:   3'- -GGAGc-CAGuGUGUGCCCCgCgaCGGC- -5'
5121 3' -60.7 NC_001798.1 + 91791 0.66 0.745051
Target:  5'- cCCUgcCGaUgACGCGCGGGGCGUgggGaCCGu -3'
miRNA:   3'- -GGA--GCcAgUGUGUGCCCCGCGa--C-GGC- -5'
5121 3' -60.7 NC_001798.1 + 153030 0.66 0.745051
Target:  5'- --cCGGgCcCGCGCGGcGGCGCgcgguugGCCGg -3'
miRNA:   3'- ggaGCCaGuGUGUGCC-CCGCGa------CGGC- -5'
5121 3' -60.7 NC_001798.1 + 32751 0.66 0.742264
Target:  5'- gCCUcCGGUCGCGCcaccCGuggucucgggagcaGGGCGCgcccgcGCCGg -3'
miRNA:   3'- -GGA-GCCAGUGUGu---GC--------------CCCGCGa-----CGGC- -5'
5121 3' -60.7 NC_001798.1 + 153663 0.66 0.73573
Target:  5'- cCCgcgCGGcgcgucCGCGgGCGGGGaCGCggggGCCGc -3'
miRNA:   3'- -GGa--GCCa-----GUGUgUGCCCC-GCGa---CGGC- -5'
5121 3' -60.7 NC_001798.1 + 22337 0.66 0.73573
Target:  5'- aCgCGGaCGCGCGggcguCGGGGCGggGCCGc -3'
miRNA:   3'- gGaGCCaGUGUGU-----GCCCCGCgaCGGC- -5'
5121 3' -60.7 NC_001798.1 + 4115 0.66 0.73573
Target:  5'- cCCUgGG-CGgGCucggcCGGGGCGCcGCCc -3'
miRNA:   3'- -GGAgCCaGUgUGu----GCCCCGCGaCGGc -5'
5121 3' -60.7 NC_001798.1 + 116510 0.66 0.73573
Target:  5'- --cCGGcCuucuCGCG-GGGGCGCUGCUGc -3'
miRNA:   3'- ggaGCCaGu---GUGUgCCCCGCGACGGC- -5'
5121 3' -60.7 NC_001798.1 + 9722 0.66 0.73573
Target:  5'- gCUCGGgcugGCGCugGGGGaGgUGCUGu -3'
miRNA:   3'- gGAGCCag--UGUGugCCCCgCgACGGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.