miRNA display CGI


Results 21 - 40 of 90 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5121 3' -60.7 NC_001798.1 + 105718 0.66 0.754281
Target:  5'- --gCGGUCgACACccaGGGGCuGUUGUCGg -3'
miRNA:   3'- ggaGCCAG-UGUGug-CCCCG-CGACGGC- -5'
5121 3' -60.7 NC_001798.1 + 129522 0.66 0.754281
Target:  5'- gCCUCGcGUUcu-C-CGGGGCGCgGCCc -3'
miRNA:   3'- -GGAGC-CAGuguGuGCCCCGCGaCGGc -5'
5121 3' -60.7 NC_001798.1 + 129286 0.66 0.754281
Target:  5'- uCCUCGGcaggCAC-CGCGcGGGCGCggaggagGgCGu -3'
miRNA:   3'- -GGAGCCa---GUGuGUGC-CCCGCGa------CgGC- -5'
5121 3' -60.7 NC_001798.1 + 31553 0.66 0.754281
Target:  5'- ---aGGUCugcCACAgucguCGGGGCGC-GCCGc -3'
miRNA:   3'- ggagCCAGu--GUGU-----GCCCCGCGaCGGC- -5'
5121 3' -60.7 NC_001798.1 + 153030 0.66 0.745051
Target:  5'- --cCGGgCcCGCGCGGcGGCGCgcgguugGCCGg -3'
miRNA:   3'- ggaGCCaGuGUGUGCC-CCGCGa------CGGC- -5'
5121 3' -60.7 NC_001798.1 + 150796 0.66 0.745051
Target:  5'- cCCcCGccCGCA-ACGGGGCGCcGCCGc -3'
miRNA:   3'- -GGaGCcaGUGUgUGCCCCGCGaCGGC- -5'
5121 3' -60.7 NC_001798.1 + 91791 0.66 0.745051
Target:  5'- cCCUgcCGaUgACGCGCGGGGCGUgggGaCCGu -3'
miRNA:   3'- -GGA--GCcAgUGUGUGCCCCGCGa--C-GGC- -5'
5121 3' -60.7 NC_001798.1 + 68597 0.66 0.745051
Target:  5'- gCCUCcaGUC-CGCGCGGGG-GgaGCUGg -3'
miRNA:   3'- -GGAGc-CAGuGUGUGCCCCgCgaCGGC- -5'
5121 3' -60.7 NC_001798.1 + 54993 0.67 0.688049
Target:  5'- cCCUCGccggcGUCuuGCcgGCGGGGCcgccCUGCCGg -3'
miRNA:   3'- -GGAGC-----CAGugUG--UGCCCCGc---GACGGC- -5'
5121 3' -60.7 NC_001798.1 + 116824 0.67 0.688049
Target:  5'- --aCGGccaacaugCGCAUcuucgACGGGGCGCUGCaCGc -3'
miRNA:   3'- ggaGCCa-------GUGUG-----UGCCCCGCGACG-GC- -5'
5121 3' -60.7 NC_001798.1 + 150832 0.67 0.678354
Target:  5'- uCCgCGGggCGC-CAgGGGGCGCcgGUCGg -3'
miRNA:   3'- -GGaGCCa-GUGuGUgCCCCGCGa-CGGC- -5'
5121 3' -60.7 NC_001798.1 + 9128 0.67 0.668624
Target:  5'- gCCgcgaggUGGUCuGCgGCACGcGGGCGCggcGCCGc -3'
miRNA:   3'- -GGa-----GCCAG-UG-UGUGC-CCCGCGa--CGGC- -5'
5121 3' -60.7 NC_001798.1 + 68298 0.67 0.668624
Target:  5'- gCUCGGUgcggugCAgACAgCGGGG-GCUGUCGu -3'
miRNA:   3'- gGAGCCA------GUgUGU-GCCCCgCGACGGC- -5'
5121 3' -60.7 NC_001798.1 + 89997 0.67 0.688049
Target:  5'- aCC-CGGUCACGaacuCGGGGCcguaCUGCUu -3'
miRNA:   3'- -GGaGCCAGUGUgu--GCCCCGc---GACGGc -5'
5121 3' -60.7 NC_001798.1 + 87990 0.67 0.694811
Target:  5'- gCCUCccggggGGUCgGCAUGCgacggcgucucccgGGGGCGCUugGCCGg -3'
miRNA:   3'- -GGAG------CCAG-UGUGUG--------------CCCCGCGA--CGGC- -5'
5121 3' -60.7 NC_001798.1 + 60955 0.67 0.697702
Target:  5'- gCgUCGuGUCACcggGCcCGGaGGCGCgGCCGu -3'
miRNA:   3'- -GgAGC-CAGUG---UGuGCC-CCGCGaCGGC- -5'
5121 3' -60.7 NC_001798.1 + 102645 0.67 0.697702
Target:  5'- gCCgggcggCGGagGgGC-CGGGGCGCccgaUGCCGa -3'
miRNA:   3'- -GGa-----GCCagUgUGuGCCCCGCG----ACGGC- -5'
5121 3' -60.7 NC_001798.1 + 47057 0.67 0.697702
Target:  5'- -aUCGGggaCGCGCAaugcCGGGGCGacagcGCCGg -3'
miRNA:   3'- ggAGCCa--GUGUGU----GCCCCGCga---CGGC- -5'
5121 3' -60.7 NC_001798.1 + 27274 0.67 0.697702
Target:  5'- cCCgUGG-CGCGCGgGGGGgagggGCUGCCGc -3'
miRNA:   3'- -GGaGCCaGUGUGUgCCCCg----CGACGGC- -5'
5121 3' -60.7 NC_001798.1 + 134462 0.67 0.658867
Target:  5'- aCCcCGG-CGCGCgguugGCGuGGGCGCgccugGCCGc -3'
miRNA:   3'- -GGaGCCaGUGUG-----UGC-CCCGCGa----CGGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.