miRNA display CGI


Results 21 - 40 of 90 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5121 3' -60.7 NC_001798.1 + 150444 0.71 0.477168
Target:  5'- aCUcCGG--ACGCGCGGGGCGacgGCCGc -3'
miRNA:   3'- gGA-GCCagUGUGUGCCCCGCga-CGGC- -5'
5121 3' -60.7 NC_001798.1 + 74094 0.71 0.477168
Target:  5'- uCUUCGGggaGCcCACGGcGGgGCUGCUGg -3'
miRNA:   3'- -GGAGCCag-UGuGUGCC-CCgCGACGGC- -5'
5121 3' -60.7 NC_001798.1 + 2844 0.7 0.495386
Target:  5'- --aCGG-CGCGCACGGcGGCcacggcggccucGCUGCCGc -3'
miRNA:   3'- ggaGCCaGUGUGUGCC-CCG------------CGACGGC- -5'
5121 3' -60.7 NC_001798.1 + 118770 0.7 0.504614
Target:  5'- cCCgCGGUaauCACGC-GGGUGCUGCCc -3'
miRNA:   3'- -GGaGCCAgu-GUGUGcCCCGCGACGGc -5'
5121 3' -60.7 NC_001798.1 + 5245 0.7 0.504614
Target:  5'- uCCUCGGg-GCGCGCGGGGCGggGg-- -3'
miRNA:   3'- -GGAGCCagUGUGUGCCCCGCgaCggc -5'
5121 3' -60.7 NC_001798.1 + 154031 0.7 0.513914
Target:  5'- gUCUgCGGUUgggaGCGCGcCGGGGCGCggcacgGCUGg -3'
miRNA:   3'- -GGA-GCCAG----UGUGU-GCCCCGCGa-----CGGC- -5'
5121 3' -60.7 NC_001798.1 + 2996 0.7 0.523284
Target:  5'- cCCgCGGgcccCGgGCGCgGGGGCGCggcggGCCGg -3'
miRNA:   3'- -GGaGCCa---GUgUGUG-CCCCGCGa----CGGC- -5'
5121 3' -60.7 NC_001798.1 + 15809 0.7 0.523284
Target:  5'- uCCUCGGUCAaggcCAUGaGGCGCcGCCc -3'
miRNA:   3'- -GGAGCCAGUgu--GUGCcCCGCGaCGGc -5'
5121 3' -60.7 NC_001798.1 + 122061 0.7 0.532719
Target:  5'- cCCUgggCGcGUCGgACGCGGaGGCGgUGCUGg -3'
miRNA:   3'- -GGA---GC-CAGUgUGUGCC-CCGCgACGGC- -5'
5121 3' -60.7 NC_001798.1 + 154086 0.7 0.532719
Target:  5'- --aCGGcuggaGCGC-CGGGGCGCgGCCGg -3'
miRNA:   3'- ggaGCCag---UGUGuGCCCCGCGaCGGC- -5'
5121 3' -60.7 NC_001798.1 + 24885 0.69 0.551764
Target:  5'- gCCU-GGUCGCcggggccCugGGcccGGCGCUGCCGc -3'
miRNA:   3'- -GGAgCCAGUGu------GugCC---CCGCGACGGC- -5'
5121 3' -60.7 NC_001798.1 + 130082 0.69 0.561365
Target:  5'- gCUCGGcgUCggGCACAggccCGGGGCGUUGCa- -3'
miRNA:   3'- gGAGCC--AG--UGUGU----GCCCCGCGACGgc -5'
5121 3' -60.7 NC_001798.1 + 125707 0.69 0.571011
Target:  5'- aCgUCGGgCGCGCGCGGGG-GCggcgagaugaGCCGa -3'
miRNA:   3'- -GgAGCCaGUGUGUGCCCCgCGa---------CGGC- -5'
5121 3' -60.7 NC_001798.1 + 25741 0.69 0.580696
Target:  5'- gUCUCGGcgcugggCGCGCA-GGGcGUGCUGCUGc -3'
miRNA:   3'- -GGAGCCa------GUGUGUgCCC-CGCGACGGC- -5'
5121 3' -60.7 NC_001798.1 + 47903 0.69 0.580696
Target:  5'- cCCgCGGacccccaaaaUgACGCGCGGGGCGCcuaagGCCu -3'
miRNA:   3'- -GGaGCC----------AgUGUGUGCCCCGCGa----CGGc -5'
5121 3' -60.7 NC_001798.1 + 50563 0.69 0.590415
Target:  5'- ---gGGUUACGCGCGGGGUGgggggugugUGCCGu -3'
miRNA:   3'- ggagCCAGUGUGUGCCCCGCg--------ACGGC- -5'
5121 3' -60.7 NC_001798.1 + 69001 0.69 0.590415
Target:  5'- gCCUCGGcggcgUCGCGCgcaucguagGCGGcGGCGCacgcgGCCa -3'
miRNA:   3'- -GGAGCC-----AGUGUG---------UGCC-CCGCGa----CGGc -5'
5121 3' -60.7 NC_001798.1 + 81588 0.69 0.590415
Target:  5'- gCCUCaacaaaACACGGGGCGCgUGCCc -3'
miRNA:   3'- -GGAGccagugUGUGCCCCGCG-ACGGc -5'
5121 3' -60.7 NC_001798.1 + 36575 0.68 0.600162
Target:  5'- gCCgggCGGggGCGCGCggcggccgggcgGGGGCGCgcggcgGCCGg -3'
miRNA:   3'- -GGa--GCCagUGUGUG------------CCCCGCGa-----CGGC- -5'
5121 3' -60.7 NC_001798.1 + 44265 0.68 0.600162
Target:  5'- gCCg-GGcUCAUACAgGGGGgcggugcugcCGCUGCCGa -3'
miRNA:   3'- -GGagCC-AGUGUGUgCCCC----------GCGACGGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.