Results 1 - 20 of 34 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
5121 | 5' | -47.5 | NC_001798.1 | + | 140077 | 1.11 | 0.015925 |
Target: 5'- cCGCAGCAACAUUAUCGUCAUCGACGAg -3' miRNA: 3'- -GCGUCGUUGUAAUAGCAGUAGCUGCU- -5' |
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5121 | 5' | -47.5 | NC_001798.1 | + | 64248 | 0.82 | 0.612173 |
Target: 5'- uGCAGaCGAUGUUGUCGUCGcCGGCGAa -3' miRNA: 3'- gCGUC-GUUGUAAUAGCAGUaGCUGCU- -5' |
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5121 | 5' | -47.5 | NC_001798.1 | + | 4228 | 0.76 | 0.876478 |
Target: 5'- gCGCGGgCGGCGUcGUCGUCGUCGuCGu -3' miRNA: 3'- -GCGUC-GUUGUAaUAGCAGUAGCuGCu -5' |
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5121 | 5' | -47.5 | NC_001798.1 | + | 116686 | 0.72 | 0.981455 |
Target: 5'- gCGCAuguuccaCAACGggcgcGUCGUCGUCGACGGg -3' miRNA: 3'- -GCGUc------GUUGUaa---UAGCAGUAGCUGCU- -5' |
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5121 | 5' | -47.5 | NC_001798.1 | + | 104517 | 0.71 | 0.983531 |
Target: 5'- aCGCGGCGGCGgcgcggUUGaCGUCGUCG-CGGu -3' miRNA: 3'- -GCGUCGUUGU------AAUaGCAGUAGCuGCU- -5' |
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5121 | 5' | -47.5 | NC_001798.1 | + | 2510 | 0.71 | 0.983531 |
Target: 5'- gCGCGGCGGCcgcggCGgcggCGUCGGCGGg -3' miRNA: 3'- -GCGUCGUUGuaauaGCa---GUAGCUGCU- -5' |
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5121 | 5' | -47.5 | NC_001798.1 | + | 122843 | 0.71 | 0.98715 |
Target: 5'- gGCGGCGGCGgc-UCGUCccucucagCGACGAc -3' miRNA: 3'- gCGUCGUUGUaauAGCAGua------GCUGCU- -5' |
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5121 | 5' | -47.5 | NC_001798.1 | + | 137310 | 0.7 | 0.993541 |
Target: 5'- gGCGGCGGCcgUucccUCAUCGGCGGg -3' miRNA: 3'- gCGUCGUUGuaAuagcAGUAGCUGCU- -5' |
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5121 | 5' | -47.5 | NC_001798.1 | + | 116352 | 0.7 | 0.993541 |
Target: 5'- aCGCGGCGGCGUgcaaCGUgG-CGACGGc -3' miRNA: 3'- -GCGUCGUUGUAaua-GCAgUaGCUGCU- -5' |
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5121 | 5' | -47.5 | NC_001798.1 | + | 131913 | 0.69 | 0.995237 |
Target: 5'- uGCAGCAGCugggcCG-CGUCGACGc -3' miRNA: 3'- gCGUCGUUGuaauaGCaGUAGCUGCu -5' |
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5121 | 5' | -47.5 | NC_001798.1 | + | 70286 | 0.69 | 0.995237 |
Target: 5'- cCGCcacGGCGGCGUuucUGUUGUCGggcgCGGCGGu -3' miRNA: 3'- -GCG---UCGUUGUA---AUAGCAGUa---GCUGCU- -5' |
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5121 | 5' | -47.5 | NC_001798.1 | + | 60853 | 0.69 | 0.995938 |
Target: 5'- gCGCGGCGACGggAUCG-CGUCcucCGAa -3' miRNA: 3'- -GCGUCGUUGUaaUAGCaGUAGcu-GCU- -5' |
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5121 | 5' | -47.5 | NC_001798.1 | + | 20670 | 0.69 | 0.995938 |
Target: 5'- aCGCAuCAuCAUcAUCGUCGUcCGACGGc -3' miRNA: 3'- -GCGUcGUuGUAaUAGCAGUA-GCUGCU- -5' |
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5121 | 5' | -47.5 | NC_001798.1 | + | 78401 | 0.68 | 0.997954 |
Target: 5'- gCGCGGCGGCGUUGgagCG-CGUgGACc- -3' miRNA: 3'- -GCGUCGUUGUAAUa--GCaGUAgCUGcu -5' |
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5121 | 5' | -47.5 | NC_001798.1 | + | 93616 | 0.68 | 0.998298 |
Target: 5'- gCGCuGCGACGgcggaGUCAUCGuCGGg -3' miRNA: 3'- -GCGuCGUUGUaauagCAGUAGCuGCU- -5' |
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5121 | 5' | -47.5 | NC_001798.1 | + | 47034 | 0.68 | 0.998298 |
Target: 5'- aCGCGGCAggcGCAcgcggCGUUAUCGGgGAc -3' miRNA: 3'- -GCGUCGU---UGUaaua-GCAGUAGCUgCU- -5' |
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5121 | 5' | -47.5 | NC_001798.1 | + | 97411 | 0.68 | 0.99848 |
Target: 5'- uGCGGCGGC----UCGUCAgccccgagcagugCGACGAg -3' miRNA: 3'- gCGUCGUUGuaauAGCAGUa------------GCUGCU- -5' |
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5121 | 5' | -47.5 | NC_001798.1 | + | 128501 | 0.68 | 0.998592 |
Target: 5'- uGCGGCugGACGccca-GUCGUCGGCGGu -3' miRNA: 3'- gCGUCG--UUGUaauagCAGUAGCUGCU- -5' |
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5121 | 5' | -47.5 | NC_001798.1 | + | 4510 | 0.68 | 0.998842 |
Target: 5'- uCGCGGUcguCGUcAUCGUCGUCGuCGu -3' miRNA: 3'- -GCGUCGuu-GUAaUAGCAGUAGCuGCu -5' |
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5121 | 5' | -47.5 | NC_001798.1 | + | 102944 | 0.68 | 0.998842 |
Target: 5'- aCGCAGCAuCA-UGUUGUUGaCGGCGGu -3' miRNA: 3'- -GCGUCGUuGUaAUAGCAGUaGCUGCU- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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