miRNA display CGI


Results 1 - 20 of 34 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5121 5' -47.5 NC_001798.1 + 2510 0.71 0.983531
Target:  5'- gCGCGGCGGCcgcggCGgcggCGUCGGCGGg -3'
miRNA:   3'- -GCGUCGUUGuaauaGCa---GUAGCUGCU- -5'
5121 5' -47.5 NC_001798.1 + 2707 0.66 0.999884
Target:  5'- cCGCGGCGACggUGUCGgccagCAgggGGCGc -3'
miRNA:   3'- -GCGUCGUUGuaAUAGCa----GUag-CUGCu -5'
5121 5' -47.5 NC_001798.1 + 3164 0.68 0.998842
Target:  5'- cCGcCGGCGcCGUcGUCGUCGUCGuCGu -3'
miRNA:   3'- -GC-GUCGUuGUAaUAGCAGUAGCuGCu -5'
5121 5' -47.5 NC_001798.1 + 3331 0.66 0.99985
Target:  5'- gGCGGCGggcuucccgcggGCGUcGUCGcCGUCGugGc -3'
miRNA:   3'- gCGUCGU------------UGUAaUAGCaGUAGCugCu -5'
5121 5' -47.5 NC_001798.1 + 4228 0.76 0.876478
Target:  5'- gCGCGGgCGGCGUcGUCGUCGUCGuCGu -3'
miRNA:   3'- -GCGUC-GUUGUAaUAGCAGUAGCuGCu -5'
5121 5' -47.5 NC_001798.1 + 4510 0.68 0.998842
Target:  5'- uCGCGGUcguCGUcAUCGUCGUCGuCGu -3'
miRNA:   3'- -GCGUCGuu-GUAaUAGCAGUAGCuGCu -5'
5121 5' -47.5 NC_001798.1 + 4773 0.66 0.999752
Target:  5'- gGCaucGGCGGCGg---CGUCGUCGGCc- -3'
miRNA:   3'- gCG---UCGUUGUaauaGCAGUAGCUGcu -5'
5121 5' -47.5 NC_001798.1 + 20670 0.69 0.995938
Target:  5'- aCGCAuCAuCAUcAUCGUCGUcCGACGGc -3'
miRNA:   3'- -GCGUcGUuGUAaUAGCAGUA-GCUGCU- -5'
5121 5' -47.5 NC_001798.1 + 24410 0.66 0.999685
Target:  5'- cCGuCGGCGGCGgcGUCGcCGgcCGACGAg -3'
miRNA:   3'- -GC-GUCGUUGUaaUAGCaGUa-GCUGCU- -5'
5121 5' -47.5 NC_001798.1 + 41670 0.67 0.999501
Target:  5'- cCGCgAGCAugGCGUgccCG-CAUCGACGGu -3'
miRNA:   3'- -GCG-UCGU--UGUAauaGCaGUAGCUGCU- -5'
5121 5' -47.5 NC_001798.1 + 43786 0.66 0.999685
Target:  5'- gCGCAgGCAGCugcgAUCGUgGgCGAUGAa -3'
miRNA:   3'- -GCGU-CGUUGuaa-UAGCAgUaGCUGCU- -5'
5121 5' -47.5 NC_001798.1 + 47034 0.68 0.998298
Target:  5'- aCGCGGCAggcGCAcgcggCGUUAUCGGgGAc -3'
miRNA:   3'- -GCGUCGU---UGUaaua-GCAGUAGCUgCU- -5'
5121 5' -47.5 NC_001798.1 + 54034 0.68 0.999053
Target:  5'- gCGCAGCGGCGgcacgUA-CGggAUCGugGAc -3'
miRNA:   3'- -GCGUCGUUGUa----AUaGCagUAGCugCU- -5'
5121 5' -47.5 NC_001798.1 + 60094 0.66 0.99985
Target:  5'- cCGCAuGCuGCA-----GUCGUCGACGAc -3'
miRNA:   3'- -GCGU-CGuUGUaauagCAGUAGCUGCU- -5'
5121 5' -47.5 NC_001798.1 + 60853 0.69 0.995938
Target:  5'- gCGCGGCGACGggAUCG-CGUCcucCGAa -3'
miRNA:   3'- -GCGUCGUUGUaaUAGCaGUAGcu-GCU- -5'
5121 5' -47.5 NC_001798.1 + 64248 0.82 0.612173
Target:  5'- uGCAGaCGAUGUUGUCGUCGcCGGCGAa -3'
miRNA:   3'- gCGUC-GUUGUAAUAGCAGUaGCUGCU- -5'
5121 5' -47.5 NC_001798.1 + 70286 0.69 0.995237
Target:  5'- cCGCcacGGCGGCGUuucUGUUGUCGggcgCGGCGGu -3'
miRNA:   3'- -GCG---UCGUUGUA---AUAGCAGUa---GCUGCU- -5'
5121 5' -47.5 NC_001798.1 + 78401 0.68 0.997954
Target:  5'- gCGCGGCGGCGUUGgagCG-CGUgGACc- -3'
miRNA:   3'- -GCGUCGUUGUAAUa--GCaGUAgCUGcu -5'
5121 5' -47.5 NC_001798.1 + 93616 0.68 0.998298
Target:  5'- gCGCuGCGACGgcggaGUCAUCGuCGGg -3'
miRNA:   3'- -GCGuCGUUGUaauagCAGUAGCuGCU- -5'
5121 5' -47.5 NC_001798.1 + 97411 0.68 0.99848
Target:  5'- uGCGGCGGC----UCGUCAgccccgagcagugCGACGAg -3'
miRNA:   3'- gCGUCGUUGuaauAGCAGUa------------GCUGCU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.