miRNA display CGI


Results 21 - 34 of 34 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5121 5' -47.5 NC_001798.1 + 102944 0.68 0.998842
Target:  5'- aCGCAGCAuCA-UGUUGUUGaCGGCGGu -3'
miRNA:   3'- -GCGUCGUuGUaAUAGCAGUaGCUGCU- -5'
5121 5' -47.5 NC_001798.1 + 104517 0.71 0.983531
Target:  5'- aCGCGGCGGCGgcgcggUUGaCGUCGUCG-CGGu -3'
miRNA:   3'- -GCGUCGUUGU------AAUaGCAGUAGCuGCU- -5'
5121 5' -47.5 NC_001798.1 + 106420 0.66 0.999806
Target:  5'- aCGCAcacaccuccCAACGUU-UUGUCAUUGGCGAa -3'
miRNA:   3'- -GCGUc--------GUUGUAAuAGCAGUAGCUGCU- -5'
5121 5' -47.5 NC_001798.1 + 116352 0.7 0.993541
Target:  5'- aCGCGGCGGCGUgcaaCGUgG-CGACGGc -3'
miRNA:   3'- -GCGUCGUUGUAaua-GCAgUaGCUGCU- -5'
5121 5' -47.5 NC_001798.1 + 116686 0.72 0.981455
Target:  5'- gCGCAuguuccaCAACGggcgcGUCGUCGUCGACGGg -3'
miRNA:   3'- -GCGUc------GUUGUaa---UAGCAGUAGCUGCU- -5'
5121 5' -47.5 NC_001798.1 + 122325 0.66 0.999884
Target:  5'- aGCAGC-GCuucGUCGUCGUCuccuACGAg -3'
miRNA:   3'- gCGUCGuUGuaaUAGCAGUAGc---UGCU- -5'
5121 5' -47.5 NC_001798.1 + 122843 0.71 0.98715
Target:  5'- gGCGGCGGCGgc-UCGUCccucucagCGACGAc -3'
miRNA:   3'- gCGUCGUUGUaauAGCAGua------GCUGCU- -5'
5121 5' -47.5 NC_001798.1 + 128501 0.68 0.998592
Target:  5'- uGCGGCugGACGccca-GUCGUCGGCGGu -3'
miRNA:   3'- gCGUCG--UUGUaauagCAGUAGCUGCU- -5'
5121 5' -47.5 NC_001798.1 + 131913 0.69 0.995237
Target:  5'- uGCAGCAGCugggcCG-CGUCGACGc -3'
miRNA:   3'- gCGUCGUUGuaauaGCaGUAGCUGCu -5'
5121 5' -47.5 NC_001798.1 + 132020 0.66 0.999775
Target:  5'- uGCAGCcuccggggcgaaaagAACGUUcacGUgGUCAUCGGgGAg -3'
miRNA:   3'- gCGUCG---------------UUGUAA---UAgCAGUAGCUgCU- -5'
5121 5' -47.5 NC_001798.1 + 137310 0.7 0.993541
Target:  5'- gGCGGCGGCcgUucccUCAUCGGCGGg -3'
miRNA:   3'- gCGUCGUUGuaAuagcAGUAGCUGCU- -5'
5121 5' -47.5 NC_001798.1 + 139521 0.66 0.999884
Target:  5'- uCGCAGCAGCAgc-UCGaCGUC-ACGc -3'
miRNA:   3'- -GCGUCGUUGUaauAGCaGUAGcUGCu -5'
5121 5' -47.5 NC_001798.1 + 140077 1.11 0.015925
Target:  5'- cCGCAGCAACAUUAUCGUCAUCGACGAg -3'
miRNA:   3'- -GCGUCGUUGUAAUAGCAGUAGCUGCU- -5'
5121 5' -47.5 NC_001798.1 + 144165 0.66 0.999806
Target:  5'- cCGCGGCGGCAgcaccucuUCGgucuggCAcCGACGGu -3'
miRNA:   3'- -GCGUCGUUGUaau-----AGCa-----GUaGCUGCU- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.