miRNA display CGI


Results 1 - 20 of 36 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5122 3' -56.2 NC_001798.1 + 4127 0.69 0.769354
Target:  5'- uCGGcCGggGcgcCGCCCCCggGGCCCUCg -3'
miRNA:   3'- uGCU-GCaaCau-GUGGGGGa-CUGGGAG- -5'
5122 3' -56.2 NC_001798.1 + 15385 0.7 0.711233
Target:  5'- cGCGGCGgag-GCGCCCaCCgGACCCg- -3'
miRNA:   3'- -UGCUGCaacaUGUGGG-GGaCUGGGag -5'
5122 3' -56.2 NC_001798.1 + 28393 0.66 0.884939
Target:  5'- cGCG-CGggaagGUACgccuccccuccgACCCCCUGAcgcCCCUCc -3'
miRNA:   3'- -UGCuGCaa---CAUG------------UGGGGGACU---GGGAG- -5'
5122 3' -56.2 NC_001798.1 + 29990 0.74 0.472002
Target:  5'- cCGugGgccGUGCgccGCCCCCcGACCCUCu -3'
miRNA:   3'- uGCugCaa-CAUG---UGGGGGaCUGGGAG- -5'
5122 3' -56.2 NC_001798.1 + 31196 0.69 0.787854
Target:  5'- cGCGACccgaccgGCGCCCCCUGGCgCCcCg -3'
miRNA:   3'- -UGCUGcaaca--UGUGGGGGACUG-GGaG- -5'
5122 3' -56.2 NC_001798.1 + 45085 0.66 0.916567
Target:  5'- gGCGccuCGUgaagGcGCGCgCCCUGGCCCg- -3'
miRNA:   3'- -UGCu--GCAa---CaUGUGgGGGACUGGGag -5'
5122 3' -56.2 NC_001798.1 + 47236 0.66 0.898281
Target:  5'- gGCGuguCGUUGgGCGgCCCCcGGCCUUUg -3'
miRNA:   3'- -UGCu--GCAACaUGUgGGGGaCUGGGAG- -5'
5122 3' -56.2 NC_001798.1 + 51541 0.7 0.711233
Target:  5'- cGCGugGgacgaguccGUGCGCUcggCCCUGGCCCUg -3'
miRNA:   3'- -UGCugCaa-------CAUGUGG---GGGACUGGGAg -5'
5122 3' -56.2 NC_001798.1 + 53981 0.67 0.85563
Target:  5'- aGCGACGUccugGgcCACCUgacgcgCCUGGCCCa- -3'
miRNA:   3'- -UGCUGCAa---CauGUGGG------GGACUGGGag -5'
5122 3' -56.2 NC_001798.1 + 64252 0.67 0.870709
Target:  5'- gACGAUGUUGUcgucgccggcgaACACCCCgCUGuuggucGCCUUg -3'
miRNA:   3'- -UGCUGCAACA------------UGUGGGG-GAC------UGGGAg -5'
5122 3' -56.2 NC_001798.1 + 70861 0.68 0.823118
Target:  5'- uCGACG----ACGCCgCCCUGACCCc- -3'
miRNA:   3'- uGCUGCaacaUGUGG-GGGACUGGGag -5'
5122 3' -56.2 NC_001798.1 + 71100 0.67 0.85563
Target:  5'- uCGGCGUgc-GCGCCCCCgggGACgCUg -3'
miRNA:   3'- uGCUGCAacaUGUGGGGGa--CUGgGAg -5'
5122 3' -56.2 NC_001798.1 + 75282 0.7 0.73097
Target:  5'- cGCGGCGcgcgAUGCCgCCCUGGCCCg- -3'
miRNA:   3'- -UGCUGCaacaUGUGG-GGGACUGGGag -5'
5122 3' -56.2 NC_001798.1 + 80219 0.68 0.805798
Target:  5'- cCGACGUuuuUGgacggAgGCCCCCcGACCCg- -3'
miRNA:   3'- uGCUGCA---ACa----UgUGGGGGaCUGGGag -5'
5122 3' -56.2 NC_001798.1 + 86027 0.74 0.462703
Target:  5'- gACGugGgcGUACGCCgaCCUGAUCCUg -3'
miRNA:   3'- -UGCugCaaCAUGUGGg-GGACUGGGAg -5'
5122 3' -56.2 NC_001798.1 + 86649 0.7 0.721139
Target:  5'- -gGGCGggucUGUAUAgCCCUgcgGGCCCUCa -3'
miRNA:   3'- ugCUGCa---ACAUGUgGGGGa--CUGGGAG- -5'
5122 3' -56.2 NC_001798.1 + 93157 0.75 0.4444
Target:  5'- gAUGGCGggcgACGCCgCCCUGGCCCUg -3'
miRNA:   3'- -UGCUGCaacaUGUGG-GGGACUGGGAg -5'
5122 3' -56.2 NC_001798.1 + 94477 0.69 0.787854
Target:  5'- gGCGACGUU----GCCCgCgUGACCCUUg -3'
miRNA:   3'- -UGCUGCAAcaugUGGG-GgACUGGGAG- -5'
5122 3' -56.2 NC_001798.1 + 97770 0.72 0.620121
Target:  5'- cACGGCGagGUGCugCCCgC-GACCUUCg -3'
miRNA:   3'- -UGCUGCaaCAUGugGGG-GaCUGGGAG- -5'
5122 3' -56.2 NC_001798.1 + 98498 0.69 0.759918
Target:  5'- gGCGGCGggagcgacGCGCCCCCguaGGCCCg- -3'
miRNA:   3'- -UGCUGCaaca----UGUGGGGGa--CUGGGag -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.