miRNA display CGI


Results 1 - 20 of 36 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5122 3' -56.2 NC_001798.1 + 139184 1.1 0.002496
Target:  5'- gACGACGUUGUACACCCCCUGACCCUCg -3'
miRNA:   3'- -UGCUGCAACAUGUGGGGGACUGGGAG- -5'
5122 3' -56.2 NC_001798.1 + 121718 0.67 0.839748
Target:  5'- cGCGACGgaGgcgGCgGCCCaCCUGuCCCUg -3'
miRNA:   3'- -UGCUGCaaCa--UG-UGGG-GGACuGGGAg -5'
5122 3' -56.2 NC_001798.1 + 123448 0.68 0.823118
Target:  5'- cCGACGcgc-GCGCCCCC-GACCCg- -3'
miRNA:   3'- uGCUGCaacaUGUGGGGGaCUGGGag -5'
5122 3' -56.2 NC_001798.1 + 117010 0.68 0.823118
Target:  5'- cGCGACGUcccccUGgu--CCCCCcGGCCCUg -3'
miRNA:   3'- -UGCUGCA-----ACauguGGGGGaCUGGGAg -5'
5122 3' -56.2 NC_001798.1 + 70861 0.68 0.823118
Target:  5'- uCGACG----ACGCCgCCCUGACCCc- -3'
miRNA:   3'- uGCUGCaacaUGUGG-GGGACUGGGag -5'
5122 3' -56.2 NC_001798.1 + 114616 0.68 0.81454
Target:  5'- cACGugcUGUUGgagaagGCGCcuCCCCUGGCCCUg -3'
miRNA:   3'- -UGCu--GCAACa-----UGUG--GGGGACUGGGAg -5'
5122 3' -56.2 NC_001798.1 + 80219 0.68 0.805798
Target:  5'- cCGACGUuuuUGgacggAgGCCCCCcGACCCg- -3'
miRNA:   3'- uGCUGCA---ACa----UgUGGGGGaCUGGGag -5'
5122 3' -56.2 NC_001798.1 + 121808 0.68 0.805798
Target:  5'- cCGGcCGUUGUcgGCACCCCa-GACCCc- -3'
miRNA:   3'- uGCU-GCAACA--UGUGGGGgaCUGGGag -5'
5122 3' -56.2 NC_001798.1 + 94477 0.69 0.787854
Target:  5'- gGCGACGUU----GCCCgCgUGACCCUUg -3'
miRNA:   3'- -UGCUGCAAcaugUGGG-GgACUGGGAG- -5'
5122 3' -56.2 NC_001798.1 + 53981 0.67 0.85563
Target:  5'- aGCGACGUccugGgcCACCUgacgcgCCUGGCCCa- -3'
miRNA:   3'- -UGCUGCAa---CauGUGGG------GGACUGGGag -5'
5122 3' -56.2 NC_001798.1 + 71100 0.67 0.85563
Target:  5'- uCGGCGUgc-GCGCCCCCgggGACgCUg -3'
miRNA:   3'- uGCUGCAacaUGUGGGGGa--CUGgGAg -5'
5122 3' -56.2 NC_001798.1 + 64252 0.67 0.870709
Target:  5'- gACGAUGUUGUcgucgccggcgaACACCCCgCUGuuggucGCCUUg -3'
miRNA:   3'- -UGCUGCAACA------------UGUGGGG-GAC------UGGGAg -5'
5122 3' -56.2 NC_001798.1 + 45085 0.66 0.916567
Target:  5'- gGCGccuCGUgaagGcGCGCgCCCUGGCCCg- -3'
miRNA:   3'- -UGCu--GCAa---CaUGUGgGGGACUGGGag -5'
5122 3' -56.2 NC_001798.1 + 108254 0.66 0.910706
Target:  5'- cUGugGUUGcccaACACCCCCgacgccagcGACCCcCa -3'
miRNA:   3'- uGCugCAACa---UGUGGGGGa--------CUGGGaG- -5'
5122 3' -56.2 NC_001798.1 + 130568 0.66 0.90461
Target:  5'- cGCGcACGUaGUgacacaGCACCCCCUcGACCa-- -3'
miRNA:   3'- -UGC-UGCAaCA------UGUGGGGGA-CUGGgag -5'
5122 3' -56.2 NC_001798.1 + 127438 0.66 0.90461
Target:  5'- cGCuGCGUUcUGCACCCC---GCCCUCu -3'
miRNA:   3'- -UGcUGCAAcAUGUGGGGgacUGGGAG- -5'
5122 3' -56.2 NC_001798.1 + 121354 0.66 0.898281
Target:  5'- cCGGCGac-UGCACCCCgUGGCgUUCg -3'
miRNA:   3'- uGCUGCaacAUGUGGGGgACUGgGAG- -5'
5122 3' -56.2 NC_001798.1 + 47236 0.66 0.898281
Target:  5'- gGCGuguCGUUGgGCGgCCCCcGGCCUUUg -3'
miRNA:   3'- -UGCu--GCAACaUGUgGGGGaCUGGGAG- -5'
5122 3' -56.2 NC_001798.1 + 131161 0.66 0.891723
Target:  5'- -gGACGgc-UACACCCCCgcGCaCCUCg -3'
miRNA:   3'- ugCUGCaacAUGUGGGGGacUG-GGAG- -5'
5122 3' -56.2 NC_001798.1 + 28393 0.66 0.884939
Target:  5'- cGCG-CGggaagGUACgccuccccuccgACCCCCUGAcgcCCCUCc -3'
miRNA:   3'- -UGCuGCaa---CAUG------------UGGGGGACU---GGGAG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.