Results 1 - 20 of 24 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# |
P value![]() |
Predicted miRNA align pattern | |||||||
5122 | 5' | -50 | NC_001798.1 | + | 124564 | 0.66 | 0.997782 |
Target: 5'- cGGucGAUCUCGgGGAggGCGGCAcCGg -3' miRNA: 3'- uCCucUUAGAGCgCCU--UGUUGUaGCa -5' |
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5122 | 5' | -50 | NC_001798.1 | + | 144148 | 0.66 | 0.997743 |
Target: 5'- cAGGAGAAcacauccUCcCGCGGcGGCAGCAccucuUCGg -3' miRNA: 3'- -UCCUCUU-------AGaGCGCC-UUGUUGU-----AGCa -5' |
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5122 | 5' | -50 | NC_001798.1 | + | 2560 | 0.66 | 0.996873 |
Target: 5'- cGGGAGGggCggcCGCGGGGCGggggGCGUCc- -3' miRNA: 3'- -UCCUCUuaGa--GCGCCUUGU----UGUAGca -5' |
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5122 | 5' | -50 | NC_001798.1 | + | 125681 | 0.66 | 0.996873 |
Target: 5'- cAGGGGggUCggggCGaaGGAGucCGACGUCGg -3' miRNA: 3'- -UCCUCuuAGa---GCg-CCUU--GUUGUAGCa -5' |
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5122 | 5' | -50 | NC_001798.1 | + | 15366 | 0.66 | 0.996873 |
Target: 5'- gGGGGGAAUCggcCGUGGGcGCGGCGgaggCGc -3' miRNA: 3'- -UCCUCUUAGa--GCGCCU-UGUUGUa---GCa -5' |
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5122 | 5' | -50 | NC_001798.1 | + | 36173 | 0.66 | 0.996767 |
Target: 5'- gGGGAGAGUgUCGUGGGuguguuuUCGUg -3' miRNA: 3'- -UCCUCUUAgAGCGCCUuguugu-AGCA- -5' |
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5122 | 5' | -50 | NC_001798.1 | + | 111671 | 0.66 | 0.996313 |
Target: 5'- -aGAGAcgCUCGgGGAcACAACAcggUCGa -3' miRNA: 3'- ucCUCUuaGAGCgCCU-UGUUGU---AGCa -5' |
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5122 | 5' | -50 | NC_001798.1 | + | 90657 | 0.66 | 0.996313 |
Target: 5'- cGGAGAugc-CGCGGAACGACGccccCGg -3' miRNA: 3'- uCCUCUuagaGCGCCUUGUUGUa---GCa -5' |
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5122 | 5' | -50 | NC_001798.1 | + | 35137 | 0.66 | 0.996313 |
Target: 5'- gAGGAGAAgggCgcgccggugCGCGGAGCAGCcuUCc- -3' miRNA: 3'- -UCCUCUUa--Ga--------GCGCCUUGUUGu-AGca -5' |
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5122 | 5' | -50 | NC_001798.1 | + | 134611 | 0.66 | 0.99613 |
Target: 5'- aAGGAGGGcgccUUCGCGGAccuggucgagguguGCGAgGUCGg -3' miRNA: 3'- -UCCUCUUa---GAGCGCCU--------------UGUUgUAGCa -5' |
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5122 | 5' | -50 | NC_001798.1 | + | 151825 | 0.66 | 0.995674 |
Target: 5'- gGGGGGGAUUuagagggCGCGGGGCGugAggCGg -3' miRNA: 3'- -UCCUCUUAGa------GCGCCUUGUugUa-GCa -5' |
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5122 | 5' | -50 | NC_001798.1 | + | 104839 | 0.67 | 0.994947 |
Target: 5'- gGGGAGGA-CUCGUGGGugGu--UCGg -3' miRNA: 3'- -UCCUCUUaGAGCGCCUugUuguAGCa -5' |
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5122 | 5' | -50 | NC_001798.1 | + | 27247 | 0.67 | 0.994125 |
Target: 5'- cGGGGGAggCggcCGCGGGACcGCAgcccCGUg -3' miRNA: 3'- -UCCUCUuaGa--GCGCCUUGuUGUa---GCA- -5' |
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5122 | 5' | -50 | NC_001798.1 | + | 150640 | 0.67 | 0.993197 |
Target: 5'- cGGGGcuGUCUCGCGGGG-GGCGUCc- -3' miRNA: 3'- uCCUCu-UAGAGCGCCUUgUUGUAGca -5' |
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5122 | 5' | -50 | NC_001798.1 | + | 45917 | 0.67 | 0.993197 |
Target: 5'- cGGcGggUCUCGgGGggUGGCGgucgCGUc -3' miRNA: 3'- uCCuCuuAGAGCgCCuuGUUGUa---GCA- -5' |
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5122 | 5' | -50 | NC_001798.1 | + | 135946 | 0.67 | 0.990993 |
Target: 5'- cGGAGGcgCccugcuggaCGCGGAGCAauacuggagacGCGUCGUg -3' miRNA: 3'- uCCUCUuaGa--------GCGCCUUGU-----------UGUAGCA- -5' |
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5122 | 5' | -50 | NC_001798.1 | + | 112579 | 0.67 | 0.990993 |
Target: 5'- cGGAGGAaCUCcccccacuGUGGAucGCGGCGUCGg -3' miRNA: 3'- uCCUCUUaGAG--------CGCCU--UGUUGUAGCa -5' |
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5122 | 5' | -50 | NC_001798.1 | + | 129584 | 0.68 | 0.984927 |
Target: 5'- gGGGAGGucGUCUCGCuGAccGCccacgaauuuGACGUCGUg -3' miRNA: 3'- -UCCUCU--UAGAGCGcCU--UG----------UUGUAGCA- -5' |
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5122 | 5' | -50 | NC_001798.1 | + | 58804 | 0.68 | 0.984927 |
Target: 5'- gAGGAGGAaaa-GgGGAugGACGUCGUc -3' miRNA: 3'- -UCCUCUUagagCgCCUugUUGUAGCA- -5' |
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5122 | 5' | -50 | NC_001798.1 | + | 22980 | 0.69 | 0.973473 |
Target: 5'- gGGGAGGccGUCgacgagccugcCGCGGA-CGGCGUCGUc -3' miRNA: 3'- -UCCUCU--UAGa----------GCGCCUuGUUGUAGCA- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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