miRNA display CGI


Results 1 - 20 of 24 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5122 5' -50 NC_001798.1 + 124564 0.66 0.997782
Target:  5'- cGGucGAUCUCGgGGAggGCGGCAcCGg -3'
miRNA:   3'- uCCucUUAGAGCgCCU--UGUUGUaGCa -5'
5122 5' -50 NC_001798.1 + 144148 0.66 0.997743
Target:  5'- cAGGAGAAcacauccUCcCGCGGcGGCAGCAccucuUCGg -3'
miRNA:   3'- -UCCUCUU-------AGaGCGCC-UUGUUGU-----AGCa -5'
5122 5' -50 NC_001798.1 + 2560 0.66 0.996873
Target:  5'- cGGGAGGggCggcCGCGGGGCGggggGCGUCc- -3'
miRNA:   3'- -UCCUCUuaGa--GCGCCUUGU----UGUAGca -5'
5122 5' -50 NC_001798.1 + 125681 0.66 0.996873
Target:  5'- cAGGGGggUCggggCGaaGGAGucCGACGUCGg -3'
miRNA:   3'- -UCCUCuuAGa---GCg-CCUU--GUUGUAGCa -5'
5122 5' -50 NC_001798.1 + 15366 0.66 0.996873
Target:  5'- gGGGGGAAUCggcCGUGGGcGCGGCGgaggCGc -3'
miRNA:   3'- -UCCUCUUAGa--GCGCCU-UGUUGUa---GCa -5'
5122 5' -50 NC_001798.1 + 36173 0.66 0.996767
Target:  5'- gGGGAGAGUgUCGUGGGuguguuuUCGUg -3'
miRNA:   3'- -UCCUCUUAgAGCGCCUuguugu-AGCA- -5'
5122 5' -50 NC_001798.1 + 111671 0.66 0.996313
Target:  5'- -aGAGAcgCUCGgGGAcACAACAcggUCGa -3'
miRNA:   3'- ucCUCUuaGAGCgCCU-UGUUGU---AGCa -5'
5122 5' -50 NC_001798.1 + 90657 0.66 0.996313
Target:  5'- cGGAGAugc-CGCGGAACGACGccccCGg -3'
miRNA:   3'- uCCUCUuagaGCGCCUUGUUGUa---GCa -5'
5122 5' -50 NC_001798.1 + 35137 0.66 0.996313
Target:  5'- gAGGAGAAgggCgcgccggugCGCGGAGCAGCcuUCc- -3'
miRNA:   3'- -UCCUCUUa--Ga--------GCGCCUUGUUGu-AGca -5'
5122 5' -50 NC_001798.1 + 134611 0.66 0.99613
Target:  5'- aAGGAGGGcgccUUCGCGGAccuggucgagguguGCGAgGUCGg -3'
miRNA:   3'- -UCCUCUUa---GAGCGCCU--------------UGUUgUAGCa -5'
5122 5' -50 NC_001798.1 + 151825 0.66 0.995674
Target:  5'- gGGGGGGAUUuagagggCGCGGGGCGugAggCGg -3'
miRNA:   3'- -UCCUCUUAGa------GCGCCUUGUugUa-GCa -5'
5122 5' -50 NC_001798.1 + 104839 0.67 0.994947
Target:  5'- gGGGAGGA-CUCGUGGGugGu--UCGg -3'
miRNA:   3'- -UCCUCUUaGAGCGCCUugUuguAGCa -5'
5122 5' -50 NC_001798.1 + 27247 0.67 0.994125
Target:  5'- cGGGGGAggCggcCGCGGGACcGCAgcccCGUg -3'
miRNA:   3'- -UCCUCUuaGa--GCGCCUUGuUGUa---GCA- -5'
5122 5' -50 NC_001798.1 + 150640 0.67 0.993197
Target:  5'- cGGGGcuGUCUCGCGGGG-GGCGUCc- -3'
miRNA:   3'- uCCUCu-UAGAGCGCCUUgUUGUAGca -5'
5122 5' -50 NC_001798.1 + 45917 0.67 0.993197
Target:  5'- cGGcGggUCUCGgGGggUGGCGgucgCGUc -3'
miRNA:   3'- uCCuCuuAGAGCgCCuuGUUGUa---GCA- -5'
5122 5' -50 NC_001798.1 + 112579 0.67 0.990993
Target:  5'- cGGAGGAaCUCcccccacuGUGGAucGCGGCGUCGg -3'
miRNA:   3'- uCCUCUUaGAG--------CGCCU--UGUUGUAGCa -5'
5122 5' -50 NC_001798.1 + 135946 0.67 0.990993
Target:  5'- cGGAGGcgCccugcuggaCGCGGAGCAauacuggagacGCGUCGUg -3'
miRNA:   3'- uCCUCUuaGa--------GCGCCUUGU-----------UGUAGCA- -5'
5122 5' -50 NC_001798.1 + 129584 0.68 0.984927
Target:  5'- gGGGAGGucGUCUCGCuGAccGCccacgaauuuGACGUCGUg -3'
miRNA:   3'- -UCCUCU--UAGAGCGcCU--UG----------UUGUAGCA- -5'
5122 5' -50 NC_001798.1 + 58804 0.68 0.984927
Target:  5'- gAGGAGGAaaa-GgGGAugGACGUCGUc -3'
miRNA:   3'- -UCCUCUUagagCgCCUugUUGUAGCA- -5'
5122 5' -50 NC_001798.1 + 22980 0.69 0.973473
Target:  5'- gGGGAGGccGUCgacgagccugcCGCGGA-CGGCGUCGUc -3'
miRNA:   3'- -UCCUCU--UAGa----------GCGCCUuGUUGUAGCA- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.