Results 61 - 68 of 68 are showing below:
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| ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# |
P value
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| Predicted miRNA align pattern | |||||||
| 5123 | 5' | -52.8 | NC_001798.1 | + | 74874 | 0.66 | 0.973947 |
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Target: 5'- gGCAGUGccGGuGggUC-GCCaCCGGGCGCg -3' miRNA: 3'- -CGUUAUa-CC-CuuGGuCGG-GGUCUGUG- -5' |
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| 5123 | 5' | -52.8 | NC_001798.1 | + | 77572 | 0.66 | 0.973947 |
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Target: 5'- ------cGGGGACCAuucCCCCAGcggGCGCg -3' miRNA: 3'- cguuauaCCCUUGGUc--GGGGUC---UGUG- -5' |
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| 5123 | 5' | -52.8 | NC_001798.1 | + | 84965 | 0.66 | 0.973947 |
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Target: 5'- cGCAGUcgGGG-AUCGcGUCCCguaacguucgcGGACGCg -3' miRNA: 3'- -CGUUAuaCCCuUGGU-CGGGG-----------UCUGUG- -5' |
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| 5123 | 5' | -52.8 | NC_001798.1 | + | 111535 | 0.66 | 0.976568 |
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Target: 5'- ----cGUGGGGcuccuCCAGCgCCCGGuCGCc -3' miRNA: 3'- cguuaUACCCUu----GGUCG-GGGUCuGUG- -5' |
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| 5123 | 5' | -52.8 | NC_001798.1 | + | 143461 | 0.66 | 0.976568 |
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Target: 5'- -----cUGGGGugcaaacguCCAGCCCCAcGAgGCa -3' miRNA: 3'- cguuauACCCUu--------GGUCGGGGU-CUgUG- -5' |
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| 5123 | 5' | -52.8 | NC_001798.1 | + | 9777 | 0.66 | 0.976568 |
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Target: 5'- cGCGGUgcugAUGGucAugUGGCCCCAGGCGu -3' miRNA: 3'- -CGUUA----UACCc-UugGUCGGGGUCUGUg -5' |
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| 5123 | 5' | -52.8 | NC_001798.1 | + | 90084 | 0.66 | 0.976568 |
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Target: 5'- ------cGGGGGCCggcaGGCCCCuGGAgGCg -3' miRNA: 3'- cguuauaCCCUUGG----UCGGGG-UCUgUG- -5' |
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| 5123 | 5' | -52.8 | NC_001798.1 | + | 96445 | 0.66 | 0.976568 |
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Target: 5'- cGCGAg--GGGGAgCGGCuCCUGGGcCACc -3' miRNA: 3'- -CGUUauaCCCUUgGUCG-GGGUCU-GUG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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