Results 61 - 68 of 68 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
5123 | 5' | -52.8 | NC_001798.1 | + | 42698 | 0.73 | 0.727593 |
Target: 5'- gGC-GUcgGGGAACCAGUCCCcGuCGCc -3' miRNA: 3'- -CGuUAuaCCCUUGGUCGGGGuCuGUG- -5' |
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5123 | 5' | -52.8 | NC_001798.1 | + | 101949 | 0.74 | 0.644451 |
Target: 5'- -gGGUggGGGGACC-GCCCCGGAUAg -3' miRNA: 3'- cgUUAuaCCCUUGGuCGGGGUCUGUg -5' |
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5123 | 5' | -52.8 | NC_001798.1 | + | 43020 | 0.75 | 0.623375 |
Target: 5'- cGCccgggGGGAGCgCggGGCCCCGGGCGCa -3' miRNA: 3'- -CGuuauaCCCUUG-G--UCGGGGUCUGUG- -5' |
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5123 | 5' | -52.8 | NC_001798.1 | + | 3022 | 0.75 | 0.623375 |
Target: 5'- gGCGGgccGGGcuccGGCCAGCCCCGG-CACg -3' miRNA: 3'- -CGUUauaCCC----UUGGUCGGGGUCuGUG- -5' |
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5123 | 5' | -52.8 | NC_001798.1 | + | 97569 | 0.76 | 0.538961 |
Target: 5'- aGCGAggacgGGGAGCgCGGCCCCgagccagGGGCGCa -3' miRNA: 3'- -CGUUaua--CCCUUG-GUCGGGG-------UCUGUG- -5' |
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5123 | 5' | -52.8 | NC_001798.1 | + | 15358 | 0.77 | 0.499636 |
Target: 5'- gGCGGUGagggGGGAAUCGGCCgUGGGCGCg -3' miRNA: 3'- -CGUUAUa---CCCUUGGUCGGgGUCUGUG- -5' |
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5123 | 5' | -52.8 | NC_001798.1 | + | 3899 | 0.8 | 0.338628 |
Target: 5'- ------gGGGGGCCGGCCCCGGGcCACg -3' miRNA: 3'- cguuauaCCCUUGGUCGGGGUCU-GUG- -5' |
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5123 | 5' | -52.8 | NC_001798.1 | + | 138840 | 1.13 | 0.002824 |
Target: 5'- cGCAAUAUGGGAACCAGCCCCAGACACg -3' miRNA: 3'- -CGUUAUACCCUUGGUCGGGGUCUGUG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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