miRNA display CGI


Results 41 - 60 of 68 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5123 5' -52.8 NC_001798.1 + 40841 0.7 0.872124
Target:  5'- cGCGuuuuUGGGGGCCgAGCCCC-GcCGCa -3'
miRNA:   3'- -CGUuau-ACCCUUGG-UCGGGGuCuGUG- -5'
5123 5' -52.8 NC_001798.1 + 106990 0.7 0.864476
Target:  5'- gGCGGcgGUGGuaauGACCAGCgCCCAGAUAa -3'
miRNA:   3'- -CGUUa-UACCc---UUGGUCG-GGGUCUGUg -5'
5123 5' -52.8 NC_001798.1 + 58213 0.7 0.856606
Target:  5'- gGCGAUGUcGGGGACCacaaacaucAGCCCguGGuuCACg -3'
miRNA:   3'- -CGUUAUA-CCCUUGG---------UCGGGguCU--GUG- -5'
5123 5' -52.8 NC_001798.1 + 76342 0.7 0.856606
Target:  5'- ------aGcGGGGCCAGCCCCuAGAUGCc -3'
miRNA:   3'- cguuauaC-CCUUGGUCGGGG-UCUGUG- -5'
5123 5' -52.8 NC_001798.1 + 90810 0.7 0.848521
Target:  5'- cGCGAUGgcuucGGGggUCAGaCCCAGAaGCg -3'
miRNA:   3'- -CGUUAUa----CCCuuGGUCgGGGUCUgUG- -5'
5123 5' -52.8 NC_001798.1 + 15038 0.7 0.848521
Target:  5'- gGCGGgagcGUGGGGcggAUgGGCCCgGGGCGCg -3'
miRNA:   3'- -CGUUa---UACCCU---UGgUCGGGgUCUGUG- -5'
5123 5' -52.8 NC_001798.1 + 80997 0.7 0.847701
Target:  5'- cGCGGUcuuGUGGGAAgccccggagccccCCGGCCCCccuGACGu -3'
miRNA:   3'- -CGUUA---UACCCUU-------------GGUCGGGGu--CUGUg -5'
5123 5' -52.8 NC_001798.1 + 132149 0.7 0.84357
Target:  5'- ------cGGGGGCCGGCgggcggggcgcccccCCCGGACGCc -3'
miRNA:   3'- cguuauaCCCUUGGUCG---------------GGGUCUGUG- -5'
5123 5' -52.8 NC_001798.1 + 109026 0.7 0.840228
Target:  5'- cGCGGUGcuccccGGGccuccGGCCGGCCCCAGGuauCGCg -3'
miRNA:   3'- -CGUUAUa-----CCC-----UUGGUCGGGGUCU---GUG- -5'
5123 5' -52.8 NC_001798.1 + 23803 0.71 0.831734
Target:  5'- aGCcGUGgcccGGGGCCGGCCCCccgcccccgGGGCGCg -3'
miRNA:   3'- -CGuUAUac--CCUUGGUCGGGG---------UCUGUG- -5'
5123 5' -52.8 NC_001798.1 + 147237 0.71 0.831734
Target:  5'- ------cGGGGGCCccggGGCCCCGGGcCGCg -3'
miRNA:   3'- cguuauaCCCUUGG----UCGGGGUCU-GUG- -5'
5123 5' -52.8 NC_001798.1 + 138578 0.71 0.805132
Target:  5'- aCAGgg-GGGGGCaCAGCaCCAGGCACu -3'
miRNA:   3'- cGUUauaCCCUUG-GUCGgGGUCUGUG- -5'
5123 5' -52.8 NC_001798.1 + 97487 0.71 0.79592
Target:  5'- cGCGAccggGGGGGCCgaggaggaagAGCCCCGGGC-Cg -3'
miRNA:   3'- -CGUUaua-CCCUUGG----------UCGGGGUCUGuG- -5'
5123 5' -52.8 NC_001798.1 + 35396 0.71 0.79592
Target:  5'- ----cGUGGG-GCCGGCCgCCGGAUGCc -3'
miRNA:   3'- cguuaUACCCuUGGUCGG-GGUCUGUG- -5'
5123 5' -52.8 NC_001798.1 + 74731 0.71 0.79499
Target:  5'- aGCAGcccUGgagGGGAccccgcccgcgaaGCCcucGGCCCCGGACGCc -3'
miRNA:   3'- -CGUU---AUa--CCCU-------------UGG---UCGGGGUCUGUG- -5'
5123 5' -52.8 NC_001798.1 + 2979 0.71 0.786551
Target:  5'- uGCGGcg-GGGcGGCCggcccgcgGGCCCCGGGCGCg -3'
miRNA:   3'- -CGUUauaCCC-UUGG--------UCGGGGUCUGUG- -5'
5123 5' -52.8 NC_001798.1 + 2095 0.72 0.777035
Target:  5'- cCGGg--GGGGGCCcGCCCCcGGCGCg -3'
miRNA:   3'- cGUUauaCCCUUGGuCGGGGuCUGUG- -5'
5123 5' -52.8 NC_001798.1 + 64101 0.72 0.777035
Target:  5'- cGgAAUcgGGGccgccCCGGCCCCcGACGCg -3'
miRNA:   3'- -CgUUAuaCCCuu---GGUCGGGGuCUGUG- -5'
5123 5' -52.8 NC_001798.1 + 122759 0.72 0.747702
Target:  5'- ------aGGGGACC-GCCCCcGACGCg -3'
miRNA:   3'- cguuauaCCCUUGGuCGGGGuCUGUG- -5'
5123 5' -52.8 NC_001798.1 + 104178 0.72 0.747702
Target:  5'- gGCAca--GGGcGGCCAGCCCCGGAaACa -3'
miRNA:   3'- -CGUuauaCCC-UUGGUCGGGGUCUgUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.