miRNA display CGI


Results 21 - 40 of 68 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5123 5' -52.8 NC_001798.1 + 86075 0.67 0.953651
Target:  5'- cGCcGUcUGGGAGUCggGGCCCCGGcuGCGCg -3'
miRNA:   3'- -CGuUAuACCCUUGG--UCGGGGUC--UGUG- -5'
5123 5' -52.8 NC_001798.1 + 134978 0.67 0.953651
Target:  5'- cGCGugccUGGGGGCCuGGCCCgCGGugGg -3'
miRNA:   3'- -CGUuau-ACCCUUGG-UCGGG-GUCugUg -5'
5123 5' -52.8 NC_001798.1 + 27529 0.67 0.949451
Target:  5'- ------cGGGAAggCAGCCCCGcGGCGCg -3'
miRNA:   3'- cguuauaCCCUUg-GUCGGGGU-CUGUG- -5'
5123 5' -52.8 NC_001798.1 + 124717 0.67 0.949451
Target:  5'- ------cGGGAcgagccaaACCAGCCCCgcAGGCAg -3'
miRNA:   3'- cguuauaCCCU--------UGGUCGGGG--UCUGUg -5'
5123 5' -52.8 NC_001798.1 + 123409 0.67 0.949451
Target:  5'- ------cGGGAGCCgcGGCCCCgccgggucaccgGGGCGCc -3'
miRNA:   3'- cguuauaCCCUUGG--UCGGGG------------UCUGUG- -5'
5123 5' -52.8 NC_001798.1 + 94582 0.67 0.949451
Target:  5'- ------cGGGucGCCAGCCuCCAGAgCGCc -3'
miRNA:   3'- cguuauaCCCu-UGGUCGG-GGUCU-GUG- -5'
5123 5' -52.8 NC_001798.1 + 66455 0.67 0.945005
Target:  5'- uGCGuugggGGGGACCgggggaAGgUCCAGGCACa -3'
miRNA:   3'- -CGUuaua-CCCUUGG------UCgGGGUCUGUG- -5'
5123 5' -52.8 NC_001798.1 + 149750 0.67 0.942218
Target:  5'- cGCGGgggccgaGGGAGguuucucgucucuccCCAGCgCCGGACGCg -3'
miRNA:   3'- -CGUUaua----CCCUU---------------GGUCGgGGUCUGUG- -5'
5123 5' -52.8 NC_001798.1 + 69124 0.68 0.935365
Target:  5'- -------aGGAGCUGGCCCCAGGCc- -3'
miRNA:   3'- cguuauacCCUUGGUCGGGGUCUGug -5'
5123 5' -52.8 NC_001798.1 + 15906 0.68 0.934856
Target:  5'- gGCGggGUGGGAagggggcguacggACCgucaucuagGGCCCCGGGgGCc -3'
miRNA:   3'- -CGUuaUACCCU-------------UGG---------UCGGGGUCUgUG- -5'
5123 5' -52.8 NC_001798.1 + 76989 0.68 0.930166
Target:  5'- gGCAGUAccGGGAggcccuggaacACCcGaCCCCGGAUACc -3'
miRNA:   3'- -CGUUAUa-CCCU-----------UGGuC-GGGGUCUGUG- -5'
5123 5' -52.8 NC_001798.1 + 120196 0.68 0.930166
Target:  5'- cGCAGUGauagaaGaGGAGCUcgGGCCCCGGGC-Cg -3'
miRNA:   3'- -CGUUAUa-----C-CCUUGG--UCGGGGUCUGuG- -5'
5123 5' -52.8 NC_001798.1 + 152625 0.68 0.930166
Target:  5'- cGCAG-AUGGGAGuCCccccggcGCCCCGccGGCGCg -3'
miRNA:   3'- -CGUUaUACCCUU-GGu------CGGGGU--CUGUG- -5'
5123 5' -52.8 NC_001798.1 + 97693 0.68 0.924714
Target:  5'- aGCGGUcgcu-GGCCAGCCUCGGGCGCu -3'
miRNA:   3'- -CGUUAuacccUUGGUCGGGGUCUGUG- -5'
5123 5' -52.8 NC_001798.1 + 146432 0.68 0.924714
Target:  5'- gGCAGaGUGcGGAGCCcccggAGCCCgCGGcCGCa -3'
miRNA:   3'- -CGUUaUAC-CCUUGG-----UCGGG-GUCuGUG- -5'
5123 5' -52.8 NC_001798.1 + 36821 0.68 0.923029
Target:  5'- uGCGGUcuaguggucggcGUGGGGACCGGCUgUguggugggugggggAGGCACg -3'
miRNA:   3'- -CGUUA------------UACCCUUGGUCGGgG--------------UCUGUG- -5'
5123 5' -52.8 NC_001798.1 + 27254 0.68 0.919009
Target:  5'- gGCGGccgcGGGAcCgCAGCCCCGuGGCGCg -3'
miRNA:   3'- -CGUUaua-CCCUuG-GUCGGGGU-CUGUG- -5'
5123 5' -52.8 NC_001798.1 + 127924 0.69 0.900383
Target:  5'- ----cGUGGGcAACCcgacggcggGGCCCCGGGCGa -3'
miRNA:   3'- cguuaUACCC-UUGG---------UCGGGGUCUGUg -5'
5123 5' -52.8 NC_001798.1 + 21966 0.69 0.879544
Target:  5'- ------cGGGAugacGCgGGCCCCGGGCAg -3'
miRNA:   3'- cguuauaCCCU----UGgUCGGGGUCUGUg -5'
5123 5' -52.8 NC_001798.1 + 21829 0.69 0.879544
Target:  5'- ------cGGGAugacGCgGGCCCCGGGCAg -3'
miRNA:   3'- cguuauaCCCU----UGgUCGGGGUCUGUg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.