miRNA display CGI


Results 21 - 40 of 68 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5123 5' -52.8 NC_001798.1 + 43020 0.75 0.623375
Target:  5'- cGCccgggGGGAGCgCggGGCCCCGGGCGCa -3'
miRNA:   3'- -CGuuauaCCCUUG-G--UCGGGGUCUGUG- -5'
5123 5' -52.8 NC_001798.1 + 58213 0.7 0.856606
Target:  5'- gGCGAUGUcGGGGACCacaaacaucAGCCCguGGuuCACg -3'
miRNA:   3'- -CGUUAUA-CCCUUGG---------UCGGGguCU--GUG- -5'
5123 5' -52.8 NC_001798.1 + 59521 0.67 0.96133
Target:  5'- aGCcGUAUGGGggUCuuuggGGaCCCCGGAagGCg -3'
miRNA:   3'- -CGuUAUACCCuuGG-----UC-GGGGUCUg-UG- -5'
5123 5' -52.8 NC_001798.1 + 64101 0.72 0.777035
Target:  5'- cGgAAUcgGGGccgccCCGGCCCCcGACGCg -3'
miRNA:   3'- -CgUUAuaCCCuu---GGUCGGGGuCUGUG- -5'
5123 5' -52.8 NC_001798.1 + 66455 0.67 0.945005
Target:  5'- uGCGuugggGGGGACCgggggaAGgUCCAGGCACa -3'
miRNA:   3'- -CGUuaua-CCCUUGG------UCgGGGUCUGUG- -5'
5123 5' -52.8 NC_001798.1 + 68609 0.67 0.953651
Target:  5'- cGCGGg--GGGAGCUGGCUCUuGACcACg -3'
miRNA:   3'- -CGUUauaCCCUUGGUCGGGGuCUG-UG- -5'
5123 5' -52.8 NC_001798.1 + 68982 0.66 0.970826
Target:  5'- cGUGAUGUGGGcccgGACC-GCCUCGGcggcgucGCGCg -3'
miRNA:   3'- -CGUUAUACCC----UUGGuCGGGGUC-------UGUG- -5'
5123 5' -52.8 NC_001798.1 + 69124 0.68 0.935365
Target:  5'- -------aGGAGCUGGCCCCAGGCc- -3'
miRNA:   3'- cguuauacCCUUGGUCGGGGUCUGug -5'
5123 5' -52.8 NC_001798.1 + 72762 0.66 0.96808
Target:  5'- --uGUcgGGGGACCAGguCCCCGGGu-- -3'
miRNA:   3'- cguUAuaCCCUUGGUC--GGGGUCUgug -5'
5123 5' -52.8 NC_001798.1 + 74731 0.71 0.79499
Target:  5'- aGCAGcccUGgagGGGAccccgcccgcgaaGCCcucGGCCCCGGACGCc -3'
miRNA:   3'- -CGUU---AUa--CCCU-------------UGG---UCGGGGUCUGUG- -5'
5123 5' -52.8 NC_001798.1 + 74874 0.66 0.973947
Target:  5'- gGCAGUGccGGuGggUC-GCCaCCGGGCGCg -3'
miRNA:   3'- -CGUUAUa-CC-CuuGGuCGG-GGUCUGUG- -5'
5123 5' -52.8 NC_001798.1 + 76342 0.7 0.856606
Target:  5'- ------aGcGGGGCCAGCCCCuAGAUGCc -3'
miRNA:   3'- cguuauaC-CCUUGGUCGGGG-UCUGUG- -5'
5123 5' -52.8 NC_001798.1 + 76989 0.68 0.930166
Target:  5'- gGCAGUAccGGGAggcccuggaacACCcGaCCCCGGAUACc -3'
miRNA:   3'- -CGUUAUa-CCCU-----------UGGuC-GGGGUCUGUG- -5'
5123 5' -52.8 NC_001798.1 + 77572 0.66 0.973947
Target:  5'- ------cGGGGACCAuucCCCCAGcggGCGCg -3'
miRNA:   3'- cguuauaCCCUUGGUc--GGGGUC---UGUG- -5'
5123 5' -52.8 NC_001798.1 + 80997 0.7 0.847701
Target:  5'- cGCGGUcuuGUGGGAAgccccggagccccCCGGCCCCccuGACGu -3'
miRNA:   3'- -CGUUA---UACCCUU-------------GGUCGGGGu--CUGUg -5'
5123 5' -52.8 NC_001798.1 + 84965 0.66 0.973947
Target:  5'- cGCAGUcgGGG-AUCGcGUCCCguaacguucgcGGACGCg -3'
miRNA:   3'- -CGUUAuaCCCuUGGU-CGGGG-----------UCUGUG- -5'
5123 5' -52.8 NC_001798.1 + 86075 0.67 0.953651
Target:  5'- cGCcGUcUGGGAGUCggGGCCCCGGcuGCGCg -3'
miRNA:   3'- -CGuUAuACCCUUGG--UCGGGGUC--UGUG- -5'
5123 5' -52.8 NC_001798.1 + 87927 0.66 0.97112
Target:  5'- gGCGAUGgcguacccGGGAuccuccGCCAG-CUCGGACACc -3'
miRNA:   3'- -CGUUAUa-------CCCU------UGGUCgGGGUCUGUG- -5'
5123 5' -52.8 NC_001798.1 + 90084 0.66 0.976568
Target:  5'- ------cGGGGGCCggcaGGCCCCuGGAgGCg -3'
miRNA:   3'- cguuauaCCCUUGG----UCGGGG-UCUgUG- -5'
5123 5' -52.8 NC_001798.1 + 90810 0.7 0.848521
Target:  5'- cGCGAUGgcuucGGGggUCAGaCCCAGAaGCg -3'
miRNA:   3'- -CGUUAUa----CCCuuGGUCgGGGUCUgUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.